Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattctttcctcagttgtcgtttttttctttctttcttcttaaaagctcttgccttcattggttgtatccacctcccatatgttgaagttaagctatttgtgcacttcgctgaccttgttttttttttttttacagACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATGTCACCTTCCAAGGGAGTGCTCTTTTATGGACCACCTGGATGTGGTAAGA

Basic information

species Physcomitrella patens
transcript PP1S99_139V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162194289|gb|FC369512.1|FC369512
EST:     CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAG                         ACTGTGCAATATCCTGTGGAGCATCCAG
genomic: CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAGgtatattctt ... ttttttacagACTGTGCAATATCCTGTGGAGCATCCAG
EST: gi|162233392|gb|FC410202.1|FC410202
EST:     CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAG                         ACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATG
genomic: CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAGgtatattctt ... ttttttacagACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATG
EST: gi|162177749|gb|FC354583.1|FC354583
EST:     CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAG                         ACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATG
genomic: CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAGgtatattctt ... ttttttacagACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATG
EST: gi|100391180|gb|BY971527.1|BY971527
EST:     CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAG                         ACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATG
genomic: CCTGGGAAGATGTCGGTGGTCTCGATAACGTCAAGCGGGAGCTCCAAGAGgtatattctt ... ttttttacagACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgaagttaagctatttgtgcacttcgctgaccttgttttttttttttttacagACTGTGCAATATCCTGTGGAGCATCCAGAGAAGTTCGAGAAGTTTGGTATGTCACCTTCCAAGGGAGTGCTCTTTTATGGACCACCTGGATGTGGTAAGA
                          cgctgac  putative branch site (score: 3)
                       cttcgctgaccttgtt  CT-rich tract
                                  ttgttttttttttttt  TA-rich tract