1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtttgcagtatcgtaggaaaagccgaacgttctcttgtgaagcaggagcagttcatcaacagcgtctgattcgtcaattttgaaattttctcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGGTGGTCGCGCTGCTCTACTTGTTGGTACAATTTCTGAAGTTAACCCTCT
species | Physcomitrella patens |
transcript | PP1S99_109V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAA TTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGEST: gi|162251557|gb|FC427744.1|FC427744
genomic: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAAgtaagtcccc ... tcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
EST: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAA TTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGEST: gi|18334620|gb|BJ166637.1|BJ166637
genomic: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAAgtaagtcccc ... tcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
EST: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAA TTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGEST: gi|162279829|gb|FC455113.1|FC455113
genomic: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAAgtaagtcccc ... tcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
EST: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAA TTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGEST: gi|37845873|gb|BJ603881.1|BJ603881
genomic: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAAgtaagtcccc ... tcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
EST: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAA TTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGEST: gi|37850821|gb|BJ608829.1|BJ608829
genomic: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAAgtaagtcccc ... tcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
EST: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAA TTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGEST: gi|208381777|gb|DC928440.1|DC928440
genomic: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAAgtaagtcccc ... tcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
EST: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAA TTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGEST: gi|162273571|gb|FC449300.1|FC449300
genomic: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAAgtaagtcccc ... tcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
EST: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAA TTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGEST: gi|162211371|gb|FC387601.1|FC387601
genomic: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAAgtaagtcccc ... tcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
EST: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAA TTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGEST: gi|162228060|gb|FC405668.1|FC405668
genomic: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAAgtaagtcccc ... tcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
EST: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAA TTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGEST: gi|162224372|gb|FC399566.1|FC399566
genomic: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAAgtaagtcccc ... tcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
EST: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAA TTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGEST: gi|162251558|gb|FC427745.1|FC427745
genomic: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAAgtaagtcccc ... tcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
EST: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAA TTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
genomic: AAAACAACAGTAACTCAATCTATCCGGACCCATCCGGTGATCCAAGAAAAgtaagtcccc ... tcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTG
gagcagttcatcaacagcgtctgattcgtcaattttgaaattttctcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGGTGGTCGCGCTGCTCTACTTGTTGGTACAATTTCTGAAGTTAACCCTCT
gtctgat putative branch site (score: 6)
ttttctcgt putative PPT
tcaattttgaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcagtatcgtaggaaaagccgaacgttctcttgtgaagcaggagcagttcatcaacagcgtctgattcgtcaattttgaaattttctcgtgtgcagTTTTTCCAAATGGAAGATAACCCGCAGAAGGATCTTTACCAGGTTGGTTTGGTGGTCGCGCTGCTCTACTTGTTGGTACAATTTCTGAAGTTAACCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG