1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atttagtgattattgaattttactaagataccaagggatccgacaccacatcatgtgcaactcactgagataaaatgcttgttatttcaaatggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGGTGCCACTACATCTGTTGTTGATAAAACAGCTGAAAAGACTGAAGTGGA
species | Physcomitrella patens |
transcript | PP1S99_109V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|100362720|gb|BY947494.1|BY947494
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|162224373|gb|FC399567.1|FC399567
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|208378714|gb|DC914688.1|DC914688
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|100396934|gb|BY953901.1|BY953901
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|100380070|gb|BY968831.1|BY968831
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|162279830|gb|FC455114.1|FC455114
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|162201983|gb|FC376981.1|FC376981
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|100399137|gb|BY954218.1|BY954218
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|100442825|gb|BY963320.1|BY963320
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|100446520|gb|CJ970819.1|CJ970819
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|18361277|gb|BJ193343.1|BJ193343
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACEST: gi|100353375|gb|BY964775.1|BY964775
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACAC
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|162180016|gb|FC356087.1|FC356087
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|162273572|gb|FC449301.1|FC449301
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGEST: gi|100353692|gb|BY983262.1|BY983262
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
EST: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTG CAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
genomic: CCATGGATTCACTCTGCCTTTGCCCAAGTCTTCCCAACGCTTGAGATCTGgtcagagtcc ... atggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATG
ccacatcatgtgcaactcactgagataaaatgcttgttatttcaaatggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGGTGCCACTACATCTGTTGTTGATAAAACAGCTGAAAAGACTGAAGTGGA
aactcac putative branch site (score: 7)
ttgttatttcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttagtgattattgaattttactaagataccaagggatccgacaccacatcatgtgcaactcactgagataaaatgcttgttatttcaaatggttgcagCAGCTTCATTTAGAGTCCGAGCAGACACTAGCGACCGAGGTCCTGAGGATGGTGCCACTACATCTGTTGTTGATAAAACAGCTGAAAAGACTGAAGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA