1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATCCACTTCGATCATTTAAAGGGCGGGACAAGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttcttcacttaatccagtgtctgtctcctagtaattattgcctggctttcaaaccgatgaggcttacgcttcagcttgggtaatgaagtgagtaaattgggattgtctcgagttttaatcgttgagtttcctgcctacttgtgcaacttggtttgatgatcaattaacttcagatctcgtctggcccag
species | Physcomitrella patens |
transcript | PP1S99_109V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAGCCCACAGTG GCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGGEST: gi|162224373|gb|FC399567.1|FC399567
genomic: GAAGCCCACAGTGgtacgttctt ... tctggcccagGCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGG
EST: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTG GCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGGEST: gi|162279829|gb|FC455113.1|FC455113
genomic: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttctt ... tctggcccagGCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGG
EST: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTG GCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGGEST: gi|208381777|gb|DC928440.1|DC928440
genomic: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttctt ... tctggcccagGCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGG
EST: AGTACNAAGGCGCAANCTGGATCAAGACTGCCTTGGAGAAGCCCACAGTG GCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGGEST: gi|100396934|gb|BY953901.1|BY953901
genomic: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttctt ... tctggcccagGCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGG
EST: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCC-ACAGTG GCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGGEST: gi|162273571|gb|FC449300.1|FC449300
genomic: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttctt ... tctggcccagGCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGG
EST: GTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTG GCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGGEST: gi|100399137|gb|BY954218.1|BY954218
genomic: GTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttctt ... tctggcccagGCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGG
EST: AGTACAAAGGCGCAAACTGGATCANGACTGCCTTGGAGAAGCC-ACAGTG GCAGTGCGTGAGATGAAGATGATATTCACAAGCGTACTGAEST: gi|100446520|gb|CJ970819.1|CJ970819
genomic: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttctt ... tctggcccagGCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGA
EST: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTG GCAGTGCGTGAGATGAEST: gi|162224372|gb|FC399566.1|FC399566
genomic: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttctt ... tctggcccagGCAGTGCGTGAGATGA
EST: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTG GCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGGEST: gi|162251558|gb|FC427745.1|FC427745
genomic: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttctt ... tctggcccagGCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGG
EST: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTG GCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGGEST: gi|162180016|gb|FC356087.1|FC356087
genomic: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttctt ... tctggcccagGCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGG
EST: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTG GCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGGEST: gi|100353692|gb|BY983262.1|BY983262
genomic: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttctt ... tctggcccagGCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCAAGTGG
EST: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTG GCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCA
genomic: AGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttctt ... tctggcccagGCAGTGCGTGAGATGAAGATGATATCCACAAGCGTACTGAAGATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCCACTTCGATCATTTAAAGGGCGGGACAAGTACAAAGGCGCAAACTGGATCAAGACTGCCTTGGAGAAGCCCACAGTGgtacgttcttcacttaatccagtgtctgtctcctagtaattattgcctggctttcaaaccgatgaggcttacgcttcagcttgggtaatgaagtgagtaaattgggattgtctcgagttttaatcgttgagtttcctgcctacttgtgcaacttggtttgatgatcaattaacttcagatctcgtctggcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC