1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtacacactgctcaatctcgtcttcttttgaatgtctttttgttctattgcatgtattttttttaatcttttgtgacgcagtatatacatttcctggagttttttcgttttttttttctgtagttttaatgaacttcattgttctatcttcagGTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAGAAGCAAAAGGATTTCAAGTTTTAGCCCTGCAAAGAGATTTTGGTTTTCC
species | Physcomitrella patens |
transcript | PP1S98_7V6.1 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAG GTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAGEST: gi|162163163|gb|FC340217.1|FC340217
genomic: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAGgtacacactg ... ctatcttcagGTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAG
EST: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAG GTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAGEST: gi|162190547|gb|FC366185.1|FC366185
genomic: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAGgtacacactg ... ctatcttcagGTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAG
EST: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAG GTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAGEST: gi|162166602|gb|FC343494.1|FC343494
genomic: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAGgtacacactg ... ctatcttcagGTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAG
EST: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAG GTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAGEST: gi|162230974|gb|FC407229.1|FC407229
genomic: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAGgtacacactg ... ctatcttcagGTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAG
EST: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAG GTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAGEST: gi|162230975|gb|FC407230.1|FC407230
genomic: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAGgtacacactg ... ctatcttcagGTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAG
EST: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAG GTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAGEST: gi|37823686|gb|BJ581752.1|BJ581752
genomic: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAGgtacacactg ... ctatcttcagGTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAG
EST: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAG GTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAG
genomic: AAGCCACTTTGGCTCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCAGAGgtacacactg ... ctatcttcagGTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAG
gttttttcgttttttttttctgtagttttaatgaacttcattgttctatcttcagGTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAGAAGCAAAAGGATTTCAAGTTTTAGCCCTGCAAAGAGATTTTGGTTTTCC
ttttaat putative branch site (score: 12)
ttctatcttc putative PPT
ttttttttttctgtag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacactgctcaatctcgtcttcttttgaatgtctttttgttctattgcatgtattttttttaatcttttgtgacgcagtatatacatttcctggagttttttcgttttttttttctgtagttttaatgaacttcattgttctatcttcagGTGGAGAAGAAGCGGAAACGTAAGGCGCAAGAAAAAGATGGTAAAGCAAAGAAGCAAAAGGATTTCAAGTTTTAGCCCTGCAAAGAGATTTTGGTTTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA