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ATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAGgttaacgtcattttgcgtttggtttttcatcttggtgccatatatttttggataaaaaggattgttgttccatcgtacttcggtggtcccatgaatcgaa...
species | Physcomitrella patens |
transcript | PP1S98_7V6.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAG GGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTCEST: gi|162163163|gb|FC340217.1|FC340217
genomic: ATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAGgttaacgtca ... ggtttttcagGGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTC
EST: ATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAG GGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTCEST: gi|162190547|gb|FC366185.1|FC366185
genomic: ATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAGgttaacgtca ... ggtttttcagGGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTC
EST: ATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAG GGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTCEST: gi|162166602|gb|FC343494.1|FC343494
genomic: ATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAGgttaacgtca ... ggtttttcagGGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTC
EST: ATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAG GGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTCEST: gi|162230974|gb|FC407229.1|FC407229
genomic: ATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAGgttaacgtca ... ggtttttcagGGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTC
EST: TAGTCATACATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAG AGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTCEST: gi|162230975|gb|FC407230.1|FC407230
genomic: TAGTCATACATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAGgttaacgtca ... ggtttttcagGGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTC
EST: AGCGGCTAAAAAG GGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTCEST: gi|37823686|gb|BJ581752.1|BJ581752
genomic: AGCGGCTAAAAAGgttaacgtca ... ggtttttcagGGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTC
EST: ATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAG GGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTC
genomic: ATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAGgttaacgtca ... ggtttttcagGGTATCGATCTACTTAAGAGTCAACGAACTGATAAAGTGGACATCACTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACGTACTGCCATCTGGGGACAAGGCAGCGGCTAAAAAGgttaacgtcattttgcgtttggtttttcatcttggtgccatatatttttggataaaaaggattgttgttccatcgtacttcggtggtcccatgaatcgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaagga