1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TACACCAACGGGCGTGGAGACGCCAGATGTTATTGACCTTCGGAAGGCACAAAGGAAAGAACCTGAGAAGCAGCTATATCATgtaagtagtatgcactgccgtgaattttgcttagtagcgctttaagatgacttttctattttctattttctattttcttttaatcctttacctcctttaggcaatgaatacagaagctttaacttggatttctaatattgagctgccatttgatatggtgattcag
species | Physcomitrella patens |
transcript | PP1S98_7V6.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: TTGACCTTCGGAAGGCACAAAGGAAAGAACCTGAGAAGCAGCTATATCAT GTTCTGGAGGAGAAAGAGGAGCGTGCCCAAGGAGGAACTATTTTGGGAACTEST: gi|162163163|gb|FC340217.1|FC340217
genomic: TTGACCTTCGGAAGGCACAAAGGAAAGAACCTGAGAAGCAGCTATATCATgtaagtagta ... ggtgattcagGTTCTGGAGGAGAAAGAGGAGCGTGCCCAAGGAGGAACTATTTTGGGAACT
EST: TTGACCTTCGGAAGGCACAAAGGAAAGAACCTGAGAAGCAGCTATATCAT GTTCTGGAGGAGAAAGAGGAGCGTGCCCAAGGAGGAACTATTTTGGGAACTEST: gi|162190547|gb|FC366185.1|FC366185
genomic: TTGACCTTCGGAAGGCACAAAGGAAAGAACCTGAGAAGCAGCTATATCATgtaagtagta ... ggtgattcagGTTCTGGAGGAGAAAGAGGAGCGTGCCCAAGGAGGAACTATTTTGGGAACT
EST: TTGACCTTCGGAAGGCACAAAGGAAAGAACCTGAGAAGCAGCTATATCAT GTTCTGGAGGAGAAAGAGGAGCGTGCCCAAGGAGGAACTATTTTGGGAACTEST: gi|37823686|gb|BJ581752.1|BJ581752
genomic: TTGACCTTCGGAAGGCACAAAGGAAAGAACCTGAGAAGCAGCTATATCATgtaagtagta ... ggtgattcagGTTCTGGAGGAGAAAGAGGAGCGTGCCCAAGGAGGAACTATTTTGGGAACT
EST: GCACAAAGGAAAGACCCTGAGAAGCAGCTATATCAT GTTCTGGAGGAGAAAGAGGAGCGTGCCCAAGGAGGAACTATTTTGGGAACT
genomic: GCACAAAGGAAAGAACCTGAGAAGCAGCTATATCATgtaagtagta ... ggtgattcagGTTCTGGAGGAGAAAGAGGAGCGTGCCCAAGGAGGAACTATTTTGGGAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACACCAACGGGCGTGGAGACGCCAGATGTTATTGACCTTCGGAAGGCACAAAGGAAAGAACCTGAGAAGCAGCTATATCATgtaagtagtatgcactgccgtgaattttgcttagtagcgctttaagatgacttttctattttctattttctattttcttttaatcctttacctcctttaggcaatgaatacagaagctttaacttggatttctaatattgagctgccatttgatatggtgattcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT