1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CATGTGGTTGTTGGAAGATGCCAAAAACAAAGACGTCGAAGATGTGGTGATCCTGTCCGGGGATCACCTGTACCGCATGGATTACCAAGATTTCGTCCAGgtaggcacccggcctaatcccatggcgcttctcaaggcatctttctccaattaccttggaaagaataacccgaatttggaactcgagttggaatttaactaacgaccttcgatttacttgaaacctcgcgaattgcag
species | Physcomitrella patens |
transcript | PP1S98_52V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTCGTCCAG AAACACAAGGATTCCGGAGCTGATGTGACTGTTTCTTGCATACCCATGGACEST: gi|162248095|gb|FC420100.1|FC420100
genomic: ATTTCGTCCAGgtaggcaccc ... cgaattgcagAAACACAAGGATTCCGGAGCTGATGTGACTGTTTCTTGCATACCCATGGAC
EST: TCCTGTCCGGGGATCACCTGTACCGCATGGATTACCAAGATTTCGTCCAG AAACACAAGGATTCCGGAGCTGATGTGACTGTTTCTTGCATACCCATGGAC
genomic: TCCTGTCCGGGGATCACCTGTACCGCATGGATTACCAAGATTTCGTCCAGgtaggcaccc ... cgaattgcagAAACACAAGGATTCCGGAGCTGATGTGACTGTTTCTTGCATACCCATGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTGGTTGTTGGAAGATGCCAAAAACAAAGACGTCGAAGATGTGGTGATCCTGTCCGGGGATCACCTGTACCGCATGGATTACCAAGATTTCGTCCAGgtaggcacccggcctaatcccatggcgcttctcaaggcatctttctccaattaccttggaaagaataacccgaatttggaactcgagttggaatttaactaacgaccttcgatttacttgaaacctcgcgaattgcag
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