1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTACCGAGCCCGCGCGAGAGTGAGGATTTGCTACAGGCCTTCCTTTTATTTGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaattgttctgcatcagcgctgttttttttcttttttttttcccctcacgtcctaggtatgtttttgaaacgtgttgtctgaggaacttgttg...
species | Physcomitrella patens |
transcript | PP1S98_52V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAG GTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAACEST: gi|18371503|gb|BJ203105.1|BJ203105
genomic: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaa ... ttgtatgcagGTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAAC
EST: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAG GTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAACEST: gi|18352859|gb|BJ184914.1|BJ184914
genomic: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaa ... ttgtatgcagGTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAAC
EST: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAG GTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCANACEST: gi|18332197|gb|BJ164210.1|BJ164210
genomic: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaa ... ttgtatgcagGTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAAC
EST: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAG GTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAACEST: gi|18325474|gb|BJ157471.1|BJ157471
genomic: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaa ... ttgtatgcagGTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAAC
EST: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAG GTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAACEST: gi|208346949|gb|DC905465.1|DC905465
genomic: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaa ... ttgtatgcagGTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAAC
EST: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAG GTTGTGTGTAGAACTCGAAGCANTCAAGTTTGCCTGTCGAATTTCTCAAACEST: gi|18359177|gb|BJ191237.1|BJ191237
genomic: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaa ... ttgtatgcagGTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAAC
EST: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAG GTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAACEST: gi|18362711|gb|BJ194782.1|BJ194782
genomic: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaa ... ttgtatgcagGTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAAC
EST: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAG GTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAACEST: gi|18358643|gb|BJ190702.1|BJ190702
genomic: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaa ... ttgtatgcagGTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAAC
EST: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAG GTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAACEST: gi|18372001|gb|BJ203603.1|BJ203603
genomic: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaa ... ttgtatgcagGTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAAC
EST: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAG GTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAACEST: gi|18371688|gb|BJ203290.1|BJ203290
genomic: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaa ... ttgtatgcagGTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAAC
EST: TGTCGACATTATTGTCCGANTAGGTTGTGGCTGAAGTTGCGGTGGAACAG GTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAAC
genomic: TGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaa ... ttgtatgcagGTTGTGTGTAGAACTCGAAGCAGTCAAGTTTGCCTGTCGAATTTCTCAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCGAGCCCGCGCGAGAGTGAGGATTTGCTACAGGCCTTCCTTTTATTTGTCGACATTATTGTCCGAGTAGGTTGTGGCTGAAGTTGCGGTGGAACAGgtaatccgaattgttctgcatcagcgctgttttttttcttttttttttcccctcacgtcctaggtatgtttttgaaacgtgttgtctgaggaacttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA