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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTACAAGATTCATATTGTGAAAGACCATGATATGAAAGAGCGAATCTGCTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggtttattgatttcattttccttcttgaatcaagtgttatgaccgacgccatgcttgtgaacatccttgccatgtgtccccatctgtaccgcatc...

Basic information

species Physcomitrella patens
transcript PP1S98_214V6.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208387788|gb|DC941357.1|DC941357
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208373484|gb|DC931901.1|DC931901
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162239278|gb|FC416521.1|FC416521
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|37839245|gb|BJ597253.1|BJ597253
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208373949|gb|DC944682.1|DC944682
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208367582|gb|DC943957.1|DC943957
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|37844423|gb|BJ602431.1|BJ602431
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|100396293|gb|BY990058.1|BY990058
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTANAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162207218|gb|FC382540.1|FC382540
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162271782|gb|FC448915.1|FC448915
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|37840221|gb|BJ598229.1|BJ598229
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|15261883|gb|BI437193.1|BI437193
EST:     CTTGGAGGGTGAGCGGCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162263590|gb|FC440100.1|FC440100
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162216213|gb|FC392630.1|FC392630
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162245832|gb|FC420473.1|FC420473
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|100431344|gb|BY960149.1|BY960149
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTC
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTC
EST: gi|37840816|gb|BJ598824.1|BJ598824
EST:     TGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: TGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208360624|gb|DC946404.1|DC946404
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162263563|gb|FC440099.1|FC440099
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162252229|gb|FC425907.1|FC425907
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|22132388|gb|BQ827128.1|BQ827128
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|18339851|gb|BJ171878.1|BJ171878
EST:     TTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: TTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162180414|gb|FC355835.1|FC355835
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162252228|gb|FC425906.1|FC425906
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162216212|gb|FC392629.1|FC392629
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162266202|gb|FC441731.1|FC441731
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|22492564|gb|BU052487.1|BU052487
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208368926|gb|DC947484.1|DC947484
EST:     C-TGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208395153|gb|DC923952.1|DC923952
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162245831|gb|FC420472.1|FC420472
EST:     TGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: TGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208387483|gb|DC933346.1|DC933346
EST:     CTTGGANGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCNAAG                         -TGTANGTGCTACAAGACGATCTCGTAAAGCTCGTCT-GGAANN-TCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208363175|gb|DC954361.1|DC954361
EST:     CNTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162239277|gb|FC416520.1|FC416520
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|162207217|gb|FC382539.1|FC382539
EST:     CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: CTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
EST: gi|208396071|gb|DC924537.1|DC924537
EST:     TTGGAGTCAGTGCAATGATCATGGGAAGCCGAG                         GTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG
genomic: TTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggttt ... tgcctggcagGTGTAGGTGCTACAAGACGATCTCGTAAAGCTCGTCTTGGAAGCGTCAGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGTACAAGATTCATATTGTGAAAGACCATGATATGAAAGAGCGAATCTGCTTGGAGGTTGAGCGTCTTGGAGTCAGTGCAATGATCATGGGAAGCCGAGgtaggggtttattgatttcattttccttcttgaatcaagtgttatgaccgacgccatgcttgtgaacatccttgccatgtgtccccatctgtaccgcatc

- - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG