1 5' 3' | 2 5' 3' |
...tcatattttacctcatggacattgcctcatttctatgttggtttttgtgttttggctctatgtttgaaaaatgctaaattgctatggagatactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTGCAGTTGATTTGAGTGATGAAAGTGCCTATGCGGTGAAGTGGGCAGTGG
species | Physcomitrella patens |
transcript | PP1S98_214V6.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|208373484|gb|DC931901.1|DC931901
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|100388120|gb|BY988593.1|BY988593
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|162239278|gb|FC416521.1|FC416521
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTG GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|208357378|gb|DC910719.1|DC910719
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|100433811|gb|BY960718.1|BY960718
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGG-G --AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|18368067|gb|BJ200152.1|BJ200152
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|208352976|gb|DC910111.1|DC910111
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGG-G --AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|100396293|gb|BY990058.1|BY990058
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|162207218|gb|FC382540.1|FC382540
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|18361536|gb|BJ193602.1|BJ193602
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGG-G --AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|18355092|gb|BJ187151.1|BJ187151
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGG-G --AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|162263590|gb|FC440100.1|FC440100
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|162216213|gb|FC392630.1|FC392630
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|162245832|gb|FC420473.1|FC420473
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|100431344|gb|BY960149.1|BY960149
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|162252229|gb|FC425907.1|FC425907
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTG GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|162180414|gb|FC355835.1|FC355835
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|208354034|gb|DC930146.1|DC930146
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGG-G --AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|22492564|gb|BU052487.1|BU052487
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|100449504|gb|CJ973792.1|CJ973792
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGG-G --AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|208387483|gb|DC933346.1|DC933346
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCA---G GGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|208389484|gb|DC929423.1|DC929423
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCANGTG GGAANCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|100368940|gb|BY984950.1|BY984950
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGG-G --AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|100384846|gb|BY969581.1|BY969581
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTG GGAAGCACGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|18363670|gb|BJ195742.1|BJ195742
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGG-G --AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|100425661|gb|BY958707.1|BY958707
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGG-G --AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|100384841|gb|BY969576.1|BY969576
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGG-G --AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|18363004|gb|BJ195076.1|BJ195076
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGG-G --AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTEST: gi|18375323|gb|BJ206901.1|BJ206901
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
EST: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGG-G --AAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
genomic: CTCGGGGGACGGGTTAGGGTTTGTTGGAGTATCGTGTTTTCTATCAGGTGgttgttcctt ... tactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATT
tgtgttttggctctatgtttgaaaaatgctaaattgctatggagatactttgcagGGAAGCATGCCGCTTACAGGTACTCAAGGAAGCGATCGAAAGATCGCGATTGCAGTTGATTTGAGTGATGAAAGTGCCTATGCGGTGAAGTGGGCAGTGG
tgctaaa putative branch site (score: 3)
tatgtttgaaaaat TA-rich tract