1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aaggggcacacagaatactgatgaacgaccgcctctgggttaggcttttgatgtaattggccttttgtctctttttgtcctgtttctttgccgtgaacagGATTATTCTGCAGATGCGGTTCTGGAGATTTTGAAAGGGCTTGTTTCTCAGTTGAATCAAAACCTGTGCTCCAAG
species | Physcomitrella patens |
transcript | PP1S98_192V6.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTATACTTCTTTTGCAAGAATTTTGAGTGCACCGCTCACAGCTCGCAAG GATTATTCTGCAGATGCGGTTCTGGAGATTTTGAAAGGGCTTGTTTCTCAGEST: gi|208387166|gb|DC945465.1|DC945465
genomic: TTTATACTTCTTTTGCAAGAATTTTGAGTGCACCGCTCACAGCTCGCAAGgttagtcaaa ... ccgtgaacagGATTATTCTGCAGATGCGGTTCTGGAGATTTTGAAAGGGCTTGTTTCTCAG
EST: TTTATACTTCTTTTGCAAGAATTTTGAGTGCACCGCTCACAGCTCGCAAG GATTATTCTGCAGATGCGGTTCTGGAGATTTTGAAAGGGCTTGTTTCTCAGEST: gi|37832405|gb|BJ590417.1|BJ590417
genomic: TTTATACTTCTTTTGCAAGAATTTTGAGTGCACCGCTCACAGCTCGCAAGgttagtcaaa ... ccgtgaacagGATTATTCTGCAGATGCGGTTCTGGAGATTTTGAAAGGGCTTGTTTCTCAG
EST: TTTATACTTCTTTTGCAAGAATTTTGAGTGCACCGCTCACAGCTCGCAAG GATTATTCTGCAGATGCGGTTCTGGAGATTTTGAAAGGGCTTGTTTCTCAG
genomic: TTTATACTTCTTTTGCAAGAATTTTGAGTGCACCGCTCACAGCTCGCAAGgttagtcaaa ... ccgtgaacagGATTATTCTGCAGATGCGGTTCTGGAGATTTTGAAAGGGCTTGTTTCTCAG
ttttgatgtaattggccttttgtctctttttgtcctgtttctttgccgtgaacagGATTATTCTGCAGATGCGGTTCTGGAGATTTTGAAAGGGCTTGTTTCTCAGTTGAATCAAAACCTGTGCTCCAAG
ttttgat putative branch site (score: 4)
ccttttgtctcttttt putative PPT
atgtaatt TA-rich tract