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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgattgatagtttcgtgacagttacctcctgtagcattttgcttaaaatctcatcaatgtttttgacaaaagttgttgggaatatctttcttttttgcagGCAGACAATAGAGAGTATTTTATCTCGTCATTTTCCCAAAACAG

Basic information

species Physcomitrella patens
transcript PP1S98_192V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37839573|gb|BJ597581.1|BJ597581
EST:     GTGCGAGCAGTAGTCTTGTACCTTGATCCTGATGCAGCTCATGAAATAAA                         GCAGACAATAGAGAGTATTTTATCTCGTCATTTTCCCAAAACAG
genomic: GTGCGAGCAGTAGTCTTGTACCTTGATCCTGATGCAGCTCATGAAATAAAgtatgtttgt ... ttttttgcagGCAGACAATAGAGAGTATTTTATCTCGTCATTTTCCCAAAACAG
EST: gi|208387166|gb|DC945465.1|DC945465
EST:     GTGCGAGCAGTAGTCTTGTACCTTGATCCTGATGCAGCTCATGAAATAAA                         GCAGACAATAGAGAGTATTTTATCTCGTCATTTTCCCAAAACAG
genomic: GTGCGAGCAGTAGTCTTGTACCTTGATCCTGATGCAGCTCATGAAATAAAgtatgtttgt ... ttttttgcagGCAGACAATAGAGAGTATTTTATCTCGTCATTTTCCCAAAACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatctcatcaatgtttttgacaaaagttgttgggaatatctttcttttttgcagGCAGACAATAGAGAGTATTTTATCTCGTCATTTTCCCAAAACAG
               ttttgac  putative branch site (score: 3)
                                     tatctttcttttttgc  putative PPT
                                   aatatctttctttttt  TA-rich tract