1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGTTTGTAGTGCTCTGCTCATGGCTGCTGTTGGCGAGTTTGATTCAAACTCCACGCATTCGTGTACAGCAATGCAGGCTCCTGCAGTCCTTGAATGACAgtatgctccctagtgctcccactcccatgttgtggcagaatgccaagctcattttccttaaatttgtgtttccaaggcattcctttctctgggttttttc...
species | Physcomitrella patens |
transcript | PP1S98_192V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCACGCATTCGTGTACAGCAATGCAGGCTCCTGCAGTCCTTGAATGACA AAAGAACATCCAGCTATTCTAATGATGAGCGGCTGAAGTTGTACGAGAACAEST: gi|18355460|gb|BJ187519.1|BJ187519
genomic: TCCACGCATTCGTGTACAGCAATGCAGGCTCCTGCAGTCCTTGAATGACAgtatgctccc ... actatcgtagAAAGAACATCCAGCTATTCTAATGATGAGCGGCTGAAGTTGTACGAGAACA
EST: TCCACGCATTCGTGTACAGCAATGCAGGCTCCTGCAGTCCTTGAATGACA AAAGAACATCCAGCTATTCTAATGATGAGCGGCTGAAGTTGTACGAGAACAEST: gi|208364559|gb|DC930949.1|DC930949
genomic: TCCACGCATTCGTGTACAGCAATGCAGGCTCCTGCAGTCCTTGAATGACAgtatgctccc ... actatcgtagAAAGAACATCCAGCTATTCTAATGATGAGCGGCTGAAGTTGTACGAGAACA
EST: TCCACGCATTCGTGTACAGCAATGCAGGCTCCTGCAGTCCTTGAATGACA AAAGAACATCCAGCTATTCTAATGATGAGCGGCTGAAGTTGTACGAGAACA
genomic: TCCACGCATTCGTGTACAGCAATGCAGGCTCCTGCAGTCCTTGAATGACAgtatgctccc ... actatcgtagAAAGAACATCCAGCTATTCTAATGATGAGCGGCTGAAGTTGTACGAGAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTTGTAGTGCTCTGCTCATGGCTGCTGTTGGCGAGTTTGATTCAAACTCCACGCATTCGTGTACAGCAATGCAGGCTCCTGCAGTCCTTGAATGACAgtatgctccctagtgctcccactcccatgttgtggcagaatgccaagctcattttccttaaatttgtgtttccaaggcattcctttctctgggttttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG