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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcactttgctgatatgtgaggcaggaacggaatgtcatgcggtaggctatatcattatcggaattttcttttctcactccatgattgtgttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGGGCGCATTGCCGTTGCTACGGCTTAGTTCTATGAGCAGTAGGACTGGTAG

Basic information

species Physcomitrella patens
transcript PP1S98_182V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37850288|gb|BJ608296.1|BJ608296
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162268465|gb|FC444338.1|FC444338
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18360494|gb|BJ192557.1|BJ192557
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|37839453|gb|BJ597461.1|BJ597461
EST:     TGCTTGAAGCAGCTCGAGGCTATCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|67712798|gb|BJ966247.1|BJ966247
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162244933|gb|FC424891.1|FC424891
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162215245|gb|FC391637.1|FC391637
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|37852065|gb|BJ610073.1|BJ610073
EST:     TGCTTGAAGCAGCTCGAGGCTATCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18369000|gb|BJ201085.1|BJ201085
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18361816|gb|BJ193883.1|BJ193883
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18372546|gb|BJ204148.1|BJ204148
EST:     TGCTTGAAGCAGCTCGAGGCTATCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162233950|gb|FC410489.1|FC410489
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162272723|gb|FC448349.1|FC448349
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162209464|gb|FC386097.1|FC386097
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162238344|gb|FC415886.1|FC415886
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|67573056|gb|BJ945880.1|BJ945880
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162202925|gb|FC380310.1|FC380310
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18364589|gb|BJ196662.1|BJ196662
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18338153|gb|BJ170177.1|BJ170177
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162211319|gb|FC387549.1|FC387549
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18359873|gb|BJ191934.1|BJ191934
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCG---AGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18349914|gb|BJ181965.1|BJ181965
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|37853275|gb|BJ611283.1|BJ611283
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACA---TCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|37828884|gb|BJ586896.1|BJ586896
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|67720364|gb|BJ970623.1|BJ970623
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|37835996|gb|BJ594007.1|BJ594007
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18349031|gb|BJ181080.1|BJ181080
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18325346|gb|BJ157342.1|BJ157342
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162272722|gb|FC448348.1|FC448348
EST:     TGCTTGAAGCAGCTCGAGGCTTTCAACATTGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162233078|gb|FC408485.1|FC408485
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|67697921|gb|BJ958154.1|BJ958154
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|67574503|gb|BJ947327.1|BJ947327
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162166057|gb|FC340453.1|FC340453
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|67724509|gb|BJ974768.1|BJ974768
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|37841865|gb|BJ599873.1|BJ599873
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|37852162|gb|BJ610170.1|BJ610170
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162245930|gb|FC420818.1|FC420818
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162223563|gb|FC399700.1|FC399700
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162202924|gb|FC380309.1|FC380309
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18372644|gb|BJ204246.1|BJ204246
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162260873|gb|FC437930.1|FC437930
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162166056|gb|FC340452.1|FC340452
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162244932|gb|FC424890.1|FC424890
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18343240|gb|BJ175278.1|BJ175278
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|37822442|gb|BJ580508.1|BJ580508
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162241414|gb|FC414640.1|FC414640
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|15320318|gb|BI488124.1|BI488124
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTANAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|67696440|gb|BJ956673.1|BJ956673
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162268466|gb|FC444339.1|FC444339
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162237596|gb|FC413042.1|FC413042
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18333293|gb|BJ165307.1|BJ165307
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|18362115|gb|BJ194183.1|BJ194183
EST:     TGCTTGAAGCAGCTCGAGGCTATCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG
EST: gi|162260874|gb|FC437931.1|FC437931
EST:     TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGG                         AGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTACATCAAGTGGCGGG
genomic: TGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 56

GCGTCAGGCCATCTCACTTTGCCAAAAGCAGTGGCTCAATTGCCAGGCACTGCTTGAAGCAGCTCGAGGCTCTCAACATCGTCGAGAAGGATCCTAAAGGgtaggtcacc ... ttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGGGCGCATTGCCGTTGCTACGGCTTAGTTCTATGAGCAGTAGGACTGGTAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctatatcattatcggaattttcttttctcactccatgattgtgttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGGGCGCATTGCCGTTGCTACGGCTTAGTTCTATGAGCAGTAGGACTGGTAG
                          ttctcac  putative branch site (score: 56)
                 aattttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agcactttgctgatatgtgaggcaggaacggaatgtcatgcggtaggctatatcattatcggaattttcttttctcactccatgattgtgttctacacagAGGAAGGCGCATCACTTCCGATGGACAGCGGGACTTAGATCAAGTGGCGGGGCGCATTGCCGTTGCTACGGCTTAGTTCTATGAGCAGTAGGACTGGTAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG