Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggcttttagtttgtctcatttttttgctgcgcatgagtatcttcaatcatatcagagctgtgaatttgagttcgaggagctttatttttttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG

Basic information

species Physcomitrella patens
transcript PP1S98_182V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37850288|gb|BJ608296.1|BJ608296
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162268465|gb|FC444338.1|FC444338
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18360494|gb|BJ192557.1|BJ192557
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|37839453|gb|BJ597461.1|BJ597461
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|67712798|gb|BJ966247.1|BJ966247
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162244933|gb|FC424891.1|FC424891
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162215245|gb|FC391637.1|FC391637
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|37852065|gb|BJ610073.1|BJ610073
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18369000|gb|BJ201085.1|BJ201085
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18361816|gb|BJ193883.1|BJ193883
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18372546|gb|BJ204148.1|BJ204148
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162233950|gb|FC410489.1|FC410489
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162272723|gb|FC448349.1|FC448349
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162209464|gb|FC386097.1|FC386097
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|15261440|gb|BI436750.1|BI436750
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162238344|gb|FC415886.1|FC415886
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|67573056|gb|BJ945880.1|BJ945880
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162202925|gb|FC380310.1|FC380310
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18364589|gb|BJ196662.1|BJ196662
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18338153|gb|BJ170177.1|BJ170177
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162211319|gb|FC387549.1|FC387549
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18359873|gb|BJ191934.1|BJ191934
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18349914|gb|BJ181965.1|BJ181965
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|37853275|gb|BJ611283.1|BJ611283
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTTAAAGA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACA-TTTAAAGA
EST: gi|37828884|gb|BJ586896.1|BJ586896
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|67720364|gb|BJ970623.1|BJ970623
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|37835996|gb|BJ594007.1|BJ594007
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18349031|gb|BJ181080.1|BJ181080
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18325346|gb|BJ157342.1|BJ157342
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162272722|gb|FC448348.1|FC448348
EST:     CAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162233078|gb|FC408485.1|FC408485
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|67697921|gb|BJ958154.1|BJ958154
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|67574503|gb|BJ947327.1|BJ947327
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162166057|gb|FC340453.1|FC340453
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|67724509|gb|BJ974768.1|BJ974768
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|37841865|gb|BJ599873.1|BJ599873
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|37852162|gb|BJ610170.1|BJ610170
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162245930|gb|FC420818.1|FC420818
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162223563|gb|FC399700.1|FC399700
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162202924|gb|FC380309.1|FC380309
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18372644|gb|BJ204246.1|BJ204246
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162260873|gb|FC437930.1|FC437930
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162166056|gb|FC340452.1|FC340452
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162244932|gb|FC424890.1|FC424890
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18343240|gb|BJ175278.1|BJ175278
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|37822442|gb|BJ580508.1|BJ580508
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162241414|gb|FC414640.1|FC414640
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|15320318|gb|BI488124.1|BI488124
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|67696440|gb|BJ956673.1|BJ956673
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162268466|gb|FC444339.1|FC444339
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162237596|gb|FC413042.1|FC413042
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|67701877|gb|BJ962110.1|BJ962110
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18333293|gb|BJ165307.1|BJ165307
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|18362115|gb|BJ194183.1|BJ194183
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
EST: gi|162260874|gb|FC437931.1|FC437931
EST:     CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAG                         ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA
genomic: CACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 85

CGCCTATCGTCGCTCCTACGCCATGGCCAAGACAGTGAAAGATGTGCCTTCACATGAGTTCGTGCGCAACTATGCTGCTCACCTGAAGCGCTCCGGCAAGgtactagtcg ... ttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcatatcagagctgtgaatttgagttcgaggagctttatttttttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG
                                   ctttatttttttgttt  CT-rich tract
                                    tttatttttttgttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gggcttttagtttgtctcatttttttgctgcgcatgagtatcttcaatcatatcagagctgtgaatttgagttcgaggagctttatttttttgtttacagATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - -tgctgcg