Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagttgccctctgcgacacgtcgacattgttgcggatcagtttgaaaaaattgggatatctcgattaattttcgccttactttttgtgttgtatt...

Basic information

species Physcomitrella patens
transcript PP1S98_182V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37850288|gb|BJ608296.1|BJ608296
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162268465|gb|FC444338.1|FC444338
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18360494|gb|BJ192557.1|BJ192557
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|37839453|gb|BJ597461.1|BJ597461
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|67712798|gb|BJ966247.1|BJ966247
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162244933|gb|FC424891.1|FC424891
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162215245|gb|FC391637.1|FC391637
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|37852065|gb|BJ610073.1|BJ610073
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18369000|gb|BJ201085.1|BJ201085
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18361816|gb|BJ193883.1|BJ193883
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18372546|gb|BJ204148.1|BJ204148
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162233950|gb|FC410489.1|FC410489
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162272723|gb|FC448349.1|FC448349
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162209464|gb|FC386097.1|FC386097
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|15261440|gb|BI436750.1|BI436750
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGGAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162238344|gb|FC415886.1|FC415886
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|67573056|gb|BJ945880.1|BJ945880
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162202925|gb|FC380310.1|FC380310
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18364589|gb|BJ196662.1|BJ196662
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18338153|gb|BJ170177.1|BJ170177
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162211319|gb|FC387549.1|FC387549
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18359873|gb|BJ191934.1|BJ191934
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18349914|gb|BJ181965.1|BJ181965
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|37853275|gb|BJ611283.1|BJ611283
EST:     TTTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: -TTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|37828884|gb|BJ586896.1|BJ586896
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|67720364|gb|BJ970623.1|BJ970623
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|37835996|gb|BJ594007.1|BJ594007
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18349031|gb|BJ181080.1|BJ181080
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18325346|gb|BJ157342.1|BJ157342
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162272722|gb|FC448348.1|FC448348
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTTTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162233078|gb|FC408485.1|FC408485
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|67697921|gb|BJ958154.1|BJ958154
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|67574503|gb|BJ947327.1|BJ947327
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162166057|gb|FC340453.1|FC340453
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|67724509|gb|BJ974768.1|BJ974768
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|37841865|gb|BJ599873.1|BJ599873
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|37852162|gb|BJ610170.1|BJ610170
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162245930|gb|FC420818.1|FC420818
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162223563|gb|FC399700.1|FC399700
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162202924|gb|FC380309.1|FC380309
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18372644|gb|BJ204246.1|BJ204246
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162260873|gb|FC437930.1|FC437930
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162166056|gb|FC340452.1|FC340452
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162244932|gb|FC424890.1|FC424890
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18343240|gb|BJ175278.1|BJ175278
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|37822442|gb|BJ580508.1|BJ580508
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162241414|gb|FC414640.1|FC414640
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|15320318|gb|BI488124.1|BI488124
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|67696440|gb|BJ956673.1|BJ956673
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162268466|gb|FC444339.1|FC444339
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162237596|gb|FC413042.1|FC413042
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|67701877|gb|BJ962110.1|BJ962110
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAG
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAG
EST: gi|18333293|gb|BJ165307.1|BJ165307
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|18362115|gb|BJ194183.1|BJ194183
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
EST: gi|162260874|gb|FC437931.1|FC437931
EST:     ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTG                         CTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT
genomic: ATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 47

ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagtt ... gtactttcagCTTCTATGGCAAGGAAGATTTACCTGAGGGGAGGGATCGGAGTAGGTGCTTTCAAGAAGATTTACGGTGGCCGCAAGAGCAACGGCGTCAGGCCATCTCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGAGGTTCCTGCTTGGGCCGATCTTGTGAAGACCGCCACATTTAAAGAATTGGCTCCCTATGATGCCGACTGGTTTTACATCCGAACTGgtaagtagttgccctctgcgacacgtcgacattgttgcggatcagtttgaaaaaattgggatatctcgattaattttcgccttactttttgtgttgtatt

- - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaaaaa