1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAATTGCATGTTCAGATTTCGCCATCTTCTGGACGAGTCAGTGACCGCAGCTAGCCCACGCAATCTGGTGCTGAGCAGAATAAAAAGCTTAAATCCTAAGgtgtgtatgtgtgtttgtatgcgggcatgaatgtatattctttggctccaattcttcaacatttacctacgtcaatccctccaactagtcctcttttaattttcatgtgctctctgcacattaatgtactgatgacgcagaaatttggttgtgattcttaag
species | Physcomitrella patens |
transcript | PP1S98_14V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTAGCCCACGCAATCTGGTGCTGAGCAGAATAAAAAGCTTAAATCCTA-G GTCTTTGTGCAAGGTGTATTCAACGCTGGCTAEST: gi|162229573|gb|FC405894.1|FC405894
genomic: CTAGCCCACGCAATCTGGTGCTGAGCAGAATAAAAAGCTTAAATCCTAAGgtgtgtatgt ... gattcttaagGTCTTTGTGCAAGGTGTATTCAACGCTGGCTA
EST: TGCTGAGCAGAATAAAAAGCTAAAATCCTAAG GTCTTTGTGCAAGGTGTATTCAACGCTGGCTACAATGCACCCTTCTTCATGEST: gi|162274790|gb|FC450830.1|FC450830
genomic: TGCTGAGCAGAATAAAAAGCTTAAATCCTAAGgtgtgtatgt ... gattcttaagGTCTTTGTGCAAGGTGTATTCAACGCTGGCTACAATGCACCCTTCTTCATG
EST: CTAGCCCACGCAATCTGGTGCTGAGCAGAATAAAAAGCTTAAATCCTAAG GTCTTTGTGCAAGGTGTATTCAACGCTGGCTACAATGCACCCTTCTTCATGEST: gi|162174364|gb|FC350435.1|FC350435
genomic: CTAGCCCACGCAATCTGGTGCTGAGCAGAATAAAAAGCTTAAATCCTAAGgtgtgtatgt ... gattcttaagGTCTTTGTGCAAGGTGTATTCAACGCTGGCTACAATGCACCCTTCTTCATG
EST: CTAGCCCACGCAATCTGGTGCTGAGCAGAATAAAAAGCTTAAATCCTAAG GTCTTTGTGCAAGGTGTATTCAACGCTGGCTACAATGCACCCTTCTTCATG
genomic: CTAGCCCACGCAATCTGGTGCTGAGCAGAATAAAAAGCTTAAATCCTAAGgtgtgtatgt ... gattcttaagGTCTTTGTGCAAGGTGTATTCAACGCTGGCTACAATGCACCCTTCTTCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTGCATGTTCAGATTTCGCCATCTTCTGGACGAGTCAGTGACCGCAGCTAGCCCACGCAATCTGGTGCTGAGCAGAATAAAAAGCTTAAATCCTAAGgtgtgtatgtgtgtttgtatgcgggcatgaatgtatattctttggctccaattcttcaacatttacctacgtcaatccctccaactagtcctcttttaattttcatgtgctctctgcacattaatgtactgatgacgcagaaatttggttgtgattcttaag
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