1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...caaggagaggatcaactatgaggtatgaacttgccaatctatacttcaacgttcttgcgttatgttataactaaaaacttcttctaccttgtttcatcagATGCGCGCATGCAGTGGAGCAAGGTAATTTTGGATATGCTAACGAGTTAATTAATGAGTTGCGTGAACACTCGTCTGCTTATGGAAATGGAAGACAACGA
species | Physcomitrella patens |
transcript | PP1S98_14V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCAATGAAGTACACGTGACTCCCGTGGATTTGACCAACCTTCTCATCAG ATGCGCGCATTCAGTGGAGCAAGGAAATTTTGGATATGCTAACGAGTTAEST: gi|162229574|gb|FC405895.1|FC405895
genomic: GGCAATGAAGTACACGTGACTCCCGTGGATTTGACCAACCTTCTCATCAGgtatggtttc ... gtttcatcagATGCGCGCATGCAGTGGAGCAAGGTAATTTTGGATATGCTAACGAGTTA
EST: GGCAATGAAGTACACGTGACTCCCGTGGATTTGACCAACCTTCTCATCAG ATGCGCGCATGCAGTGGAGCAAGGTAATTTTGGATATGCTAACGAGTTAATEST: gi|162177139|gb|FC352568.1|FC352568
genomic: GGCAATGAAGTACACGTGACTCCCGTGGATTTGACCAACCTTCTCATCAGgtatggtttc ... gtttcatcagATGCGCGCATGCAGTGGAGCAAGGTAATTTTGGATATGCTAACGAGTTAAT
EST: GGCAATGAAGTACACGTGACTCCCGTGGATTTGACCAACCTTCTCATCAG ATGCGCGCATGCAGTGGAGCAAGGTAATTTTGGATATGCTAACGAGTTAAT
genomic: GGCAATGAAGTACACGTGACTCCCGTGGATTTGACCAACCTTCTCATCAGgtatggtttc ... gtttcatcagATGCGCGCATGCAGTGGAGCAAGGTAATTTTGGATATGCTAACGAGTTAAT
tcaacgttcttgcgttatgttataactaaaaacttcttctaccttgtttcatcagATGCGCGCATGCAGTGGAGCAAGGTAATTTTGGATATGCTAACGAGTTAATTAATGAGTTGCGTGAACACTCGTCTGCTTATGGAAATGGAAGACAACGA
aactaaa putative branch site (score: 2)
cttcttctaccttgtt putative PPT
ttatgttataactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaggagaggatcaactatgaggtatgaacttgccaatctatacttcaacgttcttgcgttatgttataactaaaaacttcttctaccttgtttcatcagATGCGCGCATGCAGTGGAGCAAGGTAATTTTGGATATGCTAACGAGTTAATTAATGAGTTGCGTGAACACTCGTCTGCTTATGGAAATGGAAGACAACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA