1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgactttttccttgctattctatttgcgacgtgaagagaggatttcataaccaaacttctcatatttgaccactggcagttgttggttgcggtcttacttgtcttacatatgtggtcagGTATTGATAGGCCTCAACCTGGGTTTAGGCCCTCAGCACGAATTCAGGACACAGGACGGCGTTTGGCCAAGCTTGCAAAGAAAATGGGGGTGCCCTTTAA
species | Physcomitrella patens |
transcript | PP1S98_14V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTATCAACTTTCAACTCGCCCTGAGGGACCACCACATCTTCGAATCACAG GTATTGATAGGCCTCAACCTGGGTTTAGGCCCTCAGCACGAATTCAGGACAEST: gi|100439770|gb|BY962099.1|BY962099
genomic: CTATCAACTTTCAACTCGCCCTGAGGGACCACCACATCTTCGAATCACAGgtttgacttt ... atgtggtcagGTATTGATAGGCCTCAACCTGGGTTTAGGCCCTCAGCACGAATTCAGGACA
EST: CTATCAACTTTCAACTCGCCCTGAGGGACCACCACATCTTCGAATCACAG GTATTGATAGGCCACAACCTGGGTTTAGGCCCTCAGCACGAATTCAGGACAEST: gi|162229574|gb|FC405895.1|FC405895
genomic: CTATCAACTTTCAACTCGCCCTGAGGGACCACCACATCTTCGAATCACAGgtttgacttt ... atgtggtcagGTATTGATAGGCCTCAACCTGGGTTTAGGCCCTCAGCACGAATTCAGGACA
EST: CTATCAACTTTCAACTCGCCCTGAGGGACCACCACATCTTCGAATCACAG GTATTGATAGGCCTCAACCTGGGTTTAGGCCCTCAGCACGAATTCAGGACAEST: gi|162274790|gb|FC450830.1|FC450830
genomic: CTATCAACTTTCAACTCGCCCTGAGGGACCACCACATCTTCGAATCACAGgtttgacttt ... atgtggtcagGTATTGATAGGCCTCAACCTGGGTTTAGGCCCTCAGCACGAATTCAGGACA
EST: CTATCAACTTTCAACTCGCCCTGAGGGACCACCACATCTTCGAATCACAG GTATTGATAGGCCTCAACCTGGGTTTAGGCCCTCAGCACGAATTCAGGACA
genomic: CTATCAACTTTCAACTCGCCCTGAGGGACCACCACATCTTCGAATCACAGgtttgacttt ... atgtggtcagGTATTGATAGGCCTCAACCTGGGTTTAGGCCCTCAGCACGAATTCAGGACA
tttgaccactggcagttgttggttgcggtcttacttgtcttacatatgtggtcagGTATTGATAGGCCTCAACCTGGGTTTAGGCCCTCAGCACGAATTCAGGACACAGGACGGCGTTTGGCCAAGCTTGCAAAGAAAATGGGGGTGCCCTTTAA
gtcttac putative branch site (score: 11)
ttacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgactttttccttgctattctatttgcgacgtgaagagaggatttcataaccaaacttctcatatttgaccactggcagttgttggttgcggtcttacttgtcttacatatgtggtcagGTATTGATAGGCCTCAACCTGGGTTTAGGCCCTCAGCACGAATTCAGGACACAGGACGGCGTTTGGCCAAGCTTGCAAAGAAAATGGGGGTGCCCTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA