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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtctaagaccttgaccttcgagctttttgacttaatgttctcggtgttatcgataaatgctcaatattcccataggtaatcacgtagtgtgatgagataagctcacttgagctgatgtattatcatgtgaaatggtgtttcgtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S98_136V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67578663|gb|BJ950830.1|BJ950830
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGN                         TGGTTCATTTACCNGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162236291|gb|FC411410.1|FC411410
EST:     TTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67574583|gb|BJ947407.1|BJ947407
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162262839|gb|FC438751.1|FC438751
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162216551|gb|FC392448.1|FC392448
EST:     TTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162269838|gb|FC445888.1|FC445888
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67701028|gb|BJ961261.1|BJ961261
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162263118|gb|FC439784.1|FC439784
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162276312|gb|FC452419.1|FC452419
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67700665|gb|BJ960898.1|BJ960898
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACCAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGAC-AG
EST: gi|67691902|gb|BJ952135.1|BJ952135
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162223989|gb|FC400347.1|FC400347
EST:     TTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67578873|gb|BJ951040.1|BJ951040
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67507607|gb|BJ940488.1|BJ940488
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162226370|gb|FC403286.1|FC403286
EST:     TTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162236290|gb|FC411409.1|FC411409
EST:     TTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67572078|gb|BJ944902.1|BJ944902
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|7583735|gb|AW699641.1|AW699641
EST:     TTCCCATTATCCCAGATCTGTGCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67571413|gb|BJ944237.1|BJ944237
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGA
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGA
EST: gi|15728457|gb|BI740797.1|BI740797
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|37847166|gb|BJ605174.1|BJ605174
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162202536|gb|FC380051.1|FC380051
EST:     TTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162226371|gb|FC403287.1|FC403287
EST:     TTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67508677|gb|BJ941538.1|BJ941538
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67694743|gb|BJ954976.1|BJ954976
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67578161|gb|BJ950328.1|BJ950328
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|19790227|gb|BQ041763.1|BQ041763
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67695443|gb|BJ955676.1|BJ955676
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162256658|gb|FC433176.1|FC433176
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67698000|gb|BJ958233.1|BJ958233
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67578455|gb|BJ950622.1|BJ950622
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67701356|gb|BJ961589.1|BJ961589
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162261462|gb|FC438298.1|FC438298
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67571784|gb|BJ944608.1|BJ944608
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162202537|gb|FC380052.1|FC380052
EST:     TTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|18366775|gb|BJ198854.1|BJ198854
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162210330|gb|FC386210.1|FC386210
EST:     TTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162246712|gb|FC424694.1|FC424694
EST:     TTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162269839|gb|FC445889.1|FC445889
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|162210329|gb|FC386209.1|FC386209
EST:     TTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
EST: gi|67695152|gb|BJ955385.1|BJ955385
EST:     TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG                         TGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG
genomic: TTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtct ... tcgtgtgcagTGGTTCATTTACCGGTACTTGCTCTTCAAGCCCGACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGGgtactagtctaagaccttgaccttcgagctttttgacttaatgttctcggtgttatcgataaatgctcaatattcccataggtaatcacgtagtgtgatgagataagctcacttgagctgatgtattatcatgtgaaatggtgtttcgtgtgcag

- - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - -  AGATCA