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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agatgatcaatcagcaatatgttcatggcagcagcattgttgggcagagtagtggtaacaagagaactctgattccattttgatgatttgtatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG

Basic information

species Physcomitrella patens
transcript PP1S98_136V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67578663|gb|BJ950830.1|BJ950830
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162236291|gb|FC411410.1|FC411410
EST:     TACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATC
genomic: TACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67574583|gb|BJ947407.1|BJ947407
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162262839|gb|FC438751.1|FC438751
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162216551|gb|FC392448.1|FC392448
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162269838|gb|FC445888.1|FC445888
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67701028|gb|BJ961261.1|BJ961261
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162263118|gb|FC439784.1|FC439784
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162276312|gb|FC452419.1|FC452419
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67700665|gb|BJ960898.1|BJ960898
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67691902|gb|BJ952135.1|BJ952135
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162223989|gb|FC400347.1|FC400347
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67578873|gb|BJ951040.1|BJ951040
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67507607|gb|BJ940488.1|BJ940488
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162226370|gb|FC403286.1|FC403286
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162236290|gb|FC411409.1|FC411409
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67572078|gb|BJ944902.1|BJ944902
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|7583735|gb|AW699641.1|AW699641
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTGCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67571413|gb|BJ944237.1|BJ944237
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|15728457|gb|BI740797.1|BI740797
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|37847166|gb|BJ605174.1|BJ605174
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162202536|gb|FC380051.1|FC380051
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162226371|gb|FC403287.1|FC403287
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67508677|gb|BJ941538.1|BJ941538
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67694743|gb|BJ954976.1|BJ954976
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67578161|gb|BJ950328.1|BJ950328
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|19790227|gb|BQ041763.1|BQ041763
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67695443|gb|BJ955676.1|BJ955676
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162256658|gb|FC433176.1|FC433176
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67698000|gb|BJ958233.1|BJ958233
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67578455|gb|BJ950622.1|BJ950622
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67701356|gb|BJ961589.1|BJ961589
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162261462|gb|FC438298.1|FC438298
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67571784|gb|BJ944608.1|BJ944608
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162202537|gb|FC380052.1|FC380052
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|18366775|gb|BJ198854.1|BJ198854
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162210330|gb|FC386210.1|FC386210
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162246712|gb|FC424694.1|FC424694
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162269839|gb|FC445889.1|FC445889
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|162210329|gb|FC386209.1|FC386209
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAAATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
EST: gi|67695152|gb|BJ955385.1|BJ955385
EST:     TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAAT                         GCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC
genomic: TAGGATTTGCCGGACTCATTGGGCTGTGGGCTACTAACGGCCTTATCAATgtgagtgcct ... tatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagtagtggtaacaagagaactctgattccattttgatgatttgtatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG
                               attttgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agatgatcaatcagcaatatgttcatggcagcagcattgttgggcagagtagtggtaacaagagaactctgattccattttgatgatttgtatgtgacagGCCATTGACAAACTTCCCATTATCCCAGATCTGTTCGAGATCATCGGCATCCTGTTCTCTGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA