1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAACCAGGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggcgttgtcggacttttgttttttttcctctgacttttctgtttcggttatattttcgatcagttctgggtgacggcaggagtgccgagtctc...
species | Physcomitrella patens |
transcript | PP1S97_78V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67694652|gb|BJ954885.1|BJ954885
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|18332577|gb|BJ164590.1|BJ164590
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67692660|gb|BJ952893.1|BJ952893
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67696181|gb|BJ956414.1|BJ956414
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67572806|gb|BJ945630.1|BJ945630
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAANGAGGEST: gi|162279258|gb|FC455805.1|FC455805
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|162259989|gb|FC435292.1|FC435292
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67578333|gb|BJ950500.1|BJ950500
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67695885|gb|BJ956118.1|BJ956118
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|162246688|gb|FC425281.1|FC425281
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67701215|gb|BJ961448.1|BJ961448
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67704010|gb|BJ964243.1|BJ964243
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67696219|gb|BJ956452.1|BJ956452
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67571332|gb|BJ944156.1|BJ944156
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGEST: gi|67572512|gb|BJ945336.1|BJ945336
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|162276588|gb|FC451971.1|FC451971
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|162279259|gb|FC455806.1|FC455806
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|162260530|gb|FC435104.1|FC435104
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|162246687|gb|FC425280.1|FC425280
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTTCCGTGCCCACGGGGGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTTTGAGAAGGAGGEST: gi|67696650|gb|BJ956883.1|BJ956883
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67572841|gb|BJ945665.1|BJ945665
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGANGEST: gi|162278150|gb|FC454385.1|FC454385
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|162260531|gb|FC435105.1|FC435105
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67699663|gb|BJ959896.1|BJ959896
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67694876|gb|BJ955109.1|BJ955109
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|18329135|gb|BJ161141.1|BJ161141
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTNCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67569399|gb|BJ942223.1|BJ942223
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|162252890|gb|FC429263.1|FC429263
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67573265|gb|BJ946089.1|BJ946089
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67695151|gb|BJ955384.1|BJ955384
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67694374|gb|BJ954607.1|BJ954607
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTNTCCCTGCCACATTGAGCTCATTCTTTNTGAGAAGGAGGEST: gi|162259990|gb|FC435293.1|FC435293
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67573050|gb|BJ945874.1|BJ945874
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGGEST: gi|67571783|gb|BJ944607.1|BJ944607
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
EST: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACC CTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
genomic: GGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggc ... cgatttgcagCTTACATGTCCTCTCCCTGCCACATTGAGCTCATTCTTTCTGAGAAGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGTCTCGATGTGGACACTCTTGTTGTATCACACATTCAAGTCAACCAGGCGCAGAAGCAGCGAAGACGTACTTACCGTGCCCACGGGCGTATCAACCgtaagttggcgttgtcggacttttgttttttttcctctgacttttctgtttcggttatattttcgatcagttctgggtgacggcaggagtgccgagtctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA