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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCTCTTCTTCGCACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtacgtcttggtttccacgtgttttgtgcttgctgccatatttgatgtgtaggcttctctgggccttgttctggcagccttgtttagatgaggtatgctgtgacacatattatttcagtttagggtagcggttttgtggctgctgccccactgtagtaatctaagccgggaagcgag

Basic information

species Physcomitrella patens
transcript PP1S97_78V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18332577|gb|BJ164590.1|BJ164590
EST:     CTTCGCACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: CTTCGCACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67571063|gb|BJ943887.1|BJ943887
EST:     CTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         GTTCATG
genomic: CTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67692660|gb|BJ952893.1|BJ952893
EST:     CCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: CCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|162279258|gb|FC455805.1|FC455805
EST:     CGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: CGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67578333|gb|BJ950500.1|BJ950500
EST:     GCACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: GCACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67695885|gb|BJ956118.1|BJ956118
EST:     TACTCGCATTTC                         G-TCATG
genomic: TACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|162246688|gb|FC425281.1|FC425281
EST:     CTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: CTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67571332|gb|BJ944156.1|BJ944156
EST:     ACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: ACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67572512|gb|BJ945336.1|BJ945336
EST:     CACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: CACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|162279259|gb|FC455806.1|FC455806
EST:     CGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: CGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|162260530|gb|FC435104.1|FC435104
EST:     ACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: ACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67576166|gb|BJ948990.1|BJ948990
EST:     GACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: GACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67696650|gb|BJ956883.1|BJ956883
EST:     TCTTCTTCGCACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: TCTTCTTCGCACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67572841|gb|BJ945665.1|BJ945665
EST:     CCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: CCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|162278150|gb|FC454385.1|FC454385
EST:     ACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: ACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|162260531|gb|FC435105.1|FC435105
EST:     CCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: CCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67699663|gb|BJ959896.1|BJ959896
EST:     CAATACTCGCATTTC                         G-TCATG
genomic: CAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67571535|gb|BJ944359.1|BJ944359
EST:     CTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: CTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|18329135|gb|BJ161141.1|BJ161141
EST:     TCTTCTTCGCACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: TCTTCTTCGCACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67569399|gb|BJ942223.1|BJ942223
EST:     TCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: TCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67573265|gb|BJ946089.1|BJ946089
EST:     TCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: TCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67573050|gb|BJ945874.1|BJ945874
EST:     CACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         G-TCATG
genomic: CACTCCGACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG
EST: gi|67571783|gb|BJ944607.1|BJ944607
EST:     CTCCGAACTCGCTCCTTGCGAGCTCCAATACTCGCATTTC                         GTTCATG
genomic: CTCCG-ACTCGCTCCTTGCGAGCTCCAATACTCGCATTTCgtcatggtac ... gggaagcgagGTTAATG