Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATGgtcgttttgaggttttaggattttcagtcatggctgagggatgctttcatgtgctgtcattggtttcag

Basic information

species Physcomitrella patens
transcript PP1S97_78V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67696433|gb|BJ956666.1|BJ956666
EST:     CTCGCATTTCG-TCATG
genomic: CTCGCATTTCGTTAATG
EST: gi|18332577|gb|BJ164590.1|BJ164590
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67571063|gb|BJ943887.1|BJ943887
EST:     CAATACTCGCATTTCGTTCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67692660|gb|BJ952893.1|BJ952893
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67572806|gb|BJ945630.1|BJ945630
EST:     CTCGCATTTCG-TCATG
genomic: CTCGCATTTCGTTAATG
EST: gi|162279258|gb|FC455805.1|FC455805
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67578333|gb|BJ950500.1|BJ950500
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67695885|gb|BJ956118.1|BJ956118
EST:     TACTCGCATTTCG-TCATG
genomic: TACTCGCATTTCGTTAATG
EST: gi|162246688|gb|FC425281.1|FC425281
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67571332|gb|BJ944156.1|BJ944156
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67572512|gb|BJ945336.1|BJ945336
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|162279259|gb|FC455806.1|FC455806
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|162260530|gb|FC435104.1|FC435104
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67576166|gb|BJ948990.1|BJ948990
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67696650|gb|BJ956883.1|BJ956883
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67572841|gb|BJ945665.1|BJ945665
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|162278150|gb|FC454385.1|FC454385
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|162260531|gb|FC435105.1|FC435105
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67699663|gb|BJ959896.1|BJ959896
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67694876|gb|BJ955109.1|BJ955109
EST:     ATTTCG-TCATG
genomic: ATTTCGTTAATG
EST: gi|67571535|gb|BJ944359.1|BJ944359
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|18329135|gb|BJ161141.1|BJ161141
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67569399|gb|BJ942223.1|BJ942223
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67573265|gb|BJ946089.1|BJ946089
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67573050|gb|BJ945874.1|BJ945874
EST:     CAATACTCGCATTTCG-TCATG
genomic: CAATACTCGCATTTCGTTAATG
EST: gi|67571783|gb|BJ944607.1|BJ944607
EST:     CAATACTCGCATTTCGTTCATG
genomic: CAATACTCGCATTTCGTTAATG