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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtgagaccttttagttcaagcactccacatgtccttcaagtctgtctcatgaataatctccattgaactgagctatgaaatatttgtgtttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGATTGCCTCCAGATTGAAGAAGCTCTTGCGGCGACACCTAGCTTTGCATTC

Basic information

species Physcomitrella patens
transcript PP1S97_272V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162217792|gb|FC394092.1|FC394092
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|67574110|gb|BJ946934.1|BJ946934
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|15320083|gb|BI487628.1|BI487628
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|7207399|gb|AW561401.1|AW561401
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCT
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCT
EST: gi|162201852|gb|FC377786.1|FC377786
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|6166874|gb|AW145138.1|AW145138
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162235773|gb|FC411076.1|FC411076
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|67696887|gb|BJ957120.1|BJ957120
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162209396|gb|FC385511.1|FC385511
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162235772|gb|FC411075.1|FC411075
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|67699351|gb|BJ959584.1|BJ959584
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162246240|gb|FC423624.1|FC423624
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|15729347|gb|BI741270.1|BI741270
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|19786584|gb|BQ040505.1|BQ040505
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGTAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|6102234|gb|AW126704.1|AW126704
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|18374703|gb|BJ206281.1|BJ206281
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTG
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTG
EST: gi|15261956|gb|BI437266.1|BI437266
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTATGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162259200|gb|FC435220.1|FC435220
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162226145|gb|FC401605.1|FC401605
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|19790422|gb|BQ041862.1|BQ041862
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162202712|gb|FC379018.1|FC379018
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|67574049|gb|BJ946873.1|BJ946873
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCA
EST: gi|7286873|gb|AW599360.1|AW599360
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162274364|gb|FC450391.1|FC450391
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162216850|gb|FC393032.1|FC393032
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|15261800|gb|BI437110.1|BI437110
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTATGTTTATGAGGCCACTCG
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAA-GAGGCCACTCG
EST: gi|162202711|gb|FC379017.1|FC379017
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162223014|gb|FC399944.1|FC399944
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162223015|gb|FC399945.1|FC399945
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162277626|gb|FC453257.1|FC453257
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|15327406|gb|BI488045.1|BI488045
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162244862|gb|FC425479.1|FC425479
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|7147815|gb|AW509737.1|AW509737
EST:     TTAACTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCT
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCT
EST: gi|162257772|gb|FC434219.1|FC434219
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162228862|gb|FC405006.1|FC405006
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162244863|gb|FC425480.1|FC425480
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162260562|gb|FC436150.1|FC436150
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162201851|gb|FC377785.1|FC377785
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|7582801|gb|AW698965.1|AW698965
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162243080|gb|FC417928.1|FC417928
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162249693|gb|FC426521.1|FC426521
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|19790686|gb|BQ042002.1|BQ042002
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|37848826|gb|BJ606834.1|BJ606834
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|67697475|gb|BJ957708.1|BJ957708
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162224128|gb|FC399192.1|FC399192
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|208364375|gb|DC950676.1|DC950676
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|208391463|gb|DC937611.1|DC937611
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|15261445|gb|BI436755.1|BI436755
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTATGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162243081|gb|FC417929.1|FC417929
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|7286392|gb|AW598933.1|AW598933
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162276009|gb|FC452285.1|FC452285
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|67572354|gb|BJ945178.1|BJ945178
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|15261796|gb|BI437106.1|BI437106
EST:     TTAGCTCGCTACTACTTTCTCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162260563|gb|FC436151.1|FC436151
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|15261841|gb|BI437151.1|BI437151
EST:     TTATTTCTCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|67695729|gb|BJ955962.1|BJ955962
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|67575868|gb|BJ948692.1|BJ948692
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|67573503|gb|BJ946327.1|BJ946327
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162257771|gb|FC434218.1|FC434218
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|162246239|gb|FC423623.1|FC423623
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|19782649|gb|BQ039884.1|BQ039884
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCT
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCT
EST: gi|67697502|gb|BJ957735.1|BJ957735
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|15261446|gb|BI436756.1|BI436756
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAAGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|67699131|gb|BJ959364.1|BJ959364
EST:     TTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|67574084|gb|BJ946908.1|BJ946908
EST:     TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
EST: gi|15320374|gb|BI488200.1|BI488200
EST:     TTAGCTCGCTACTACTTTCGCACAAAGAAGCTTCCCCCCACCTGGAAGTA                         TGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA
genomic: TTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 60

ATAAGGATTCCAAGTTCCGTTTGATTTTGATCGAGAGCCGTGTACACCGGTTAGCTCGCTACTACAAGCGCACAAAGAAGCTTCCCCCCACCTGGAAGTAgtaagttacc ... ttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGATTGCCTCCAGATTGAAGAAGCTCTTGCGGCGACACCTAGCTTTGCATTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcatgaataatctccattgaactgagctatgaaatatttgtgtttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGATTGCCTCCAGATTGAAGAAGCTCTTGCGGCGACACCTAGCTTTGCATTC
                             tatgaaatatttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtgagaccttttagttcaagcactccacatgtccttcaagtctgtctcatgaataatctccattgaactgagctatgaaatatttgtgtttgtgtgcagTGAGTCTGCCACCGCCAGTACACTCGTTGCTTAGGTGAAGAGGCCACTCGATTGCCTCCAGATTGAAGAAGCTCTTGCGGCGACACCTAGCTTTGCATTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - cacatgt