1 5' 3' | 2 5' 3' | 3 5' 3' |
...agatggtgctacatgaagtcggaacttggtgtagatgaattgtttaaatttcattatttttccttcttaaggcttactagaccatttgcatggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGTTGCCGTGCGTAAGCATTTGGAGAGGAACCGCAAAGATAAGGATTCCAA
species | Physcomitrella patens |
transcript | PP1S97_272V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|67574110|gb|BJ946934.1|BJ946934
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|15320083|gb|BI487628.1|BI487628
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|7207399|gb|AW561401.1|AW561401
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162201852|gb|FC377786.1|FC377786
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162235773|gb|FC411076.1|FC411076
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|67696887|gb|BJ957120.1|BJ957120
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162235772|gb|FC411075.1|FC411075
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|67699351|gb|BJ959584.1|BJ959584
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162246240|gb|FC423624.1|FC423624
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|15729347|gb|BI741270.1|BI741270
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|19786584|gb|BQ040505.1|BQ040505
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: ATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|6102234|gb|AW126704.1|AW126704
genomic: ATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCNTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|18374703|gb|BJ206281.1|BJ206281
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|15261956|gb|BI437266.1|BI437266
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162259200|gb|FC435220.1|FC435220
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162226145|gb|FC401605.1|FC401605
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|19790422|gb|BQ041862.1|BQ041862
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTTCTTTTATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162202712|gb|FC379018.1|FC379018
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|67574049|gb|BJ946873.1|BJ946873
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAANGCCGEST: gi|162274364|gb|FC450391.1|FC450391
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162216850|gb|FC393032.1|FC393032
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162202711|gb|FC379017.1|FC379017
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162223014|gb|FC399944.1|FC399944
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162223015|gb|FC399945.1|FC399945
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162277626|gb|FC453257.1|FC453257
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|15327406|gb|BI488045.1|BI488045
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162244862|gb|FC425479.1|FC425479
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCTGEST: gi|7147815|gb|AW509737.1|AW509737
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162257772|gb|FC434219.1|FC434219
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162228862|gb|FC405006.1|FC405006
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162244863|gb|FC425480.1|FC425480
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCTGEST: gi|162260562|gb|FC436150.1|FC436150
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162201851|gb|FC377785.1|FC377785
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|7582801|gb|AW698965.1|AW698965
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162243080|gb|FC417928.1|FC417928
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162249693|gb|FC426521.1|FC426521
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|19790686|gb|BQ042002.1|BQ042002
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: ATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|37848826|gb|BJ606834.1|BJ606834
genomic: ATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|67697475|gb|BJ957708.1|BJ957708
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162224128|gb|FC399192.1|FC399192
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|208364375|gb|DC950676.1|DC950676
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|208391463|gb|DC937611.1|DC937611
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162243081|gb|FC417929.1|FC417929
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|7286392|gb|AW598933.1|AW598933
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162276009|gb|FC452285.1|FC452285
genomic: GCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|67572354|gb|BJ945178.1|BJ945178
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|15261796|gb|BI437106.1|BI437106
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162260563|gb|FC436151.1|FC436151
genomic: GTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|15261841|gb|BI437151.1|BI437151
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|67695729|gb|BJ955962.1|BJ955962
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|67575868|gb|BJ948692.1|BJ948692
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|67573503|gb|BJ946327.1|BJ946327
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162257771|gb|FC434218.1|FC434218
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|162246239|gb|FC423623.1|FC423623
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|19782649|gb|BQ039884.1|BQ039884
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|67697502|gb|BJ957735.1|BJ957735
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|67574084|gb|BJ946908.1|BJ946908
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGEST: gi|15320374|gb|BI488200.1|BI488200
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: AGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: AGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
aaatttcattatttttccttcttaaggcttactagaccatttgcatggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGTTGCCGTGCGTAAGCATTTGGAGAGGAACCGCAAAGATAAGGATTCCAA
ggcttac putative branch site (score: 26)
tcattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatggtgctacatgaagtcggaacttggtgtagatgaattgtttaaatttcattatttttccttcttaaggcttactagaccatttgcatggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGTTGCCGTGCGTAAGCATTTGGAGAGGAACCGCAAAGATAAGGATTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - tgctaca