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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCCTTCTCAGATTGGTGTGATTCTGAGGGATTCGCATGGTATCGCTCAGGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgatttccgactttctctttagaccttctgtatgccgcactggaaagtcttggggcttaaacagtgagctgtcaggggctatgcatggtaaacgct...

Basic information

species Physcomitrella patens
transcript PP1S97_272V6.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S97_272V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA05G03900.2 (Glycine max), 5'ss of exon 3
ACCCCTTCTCAGATTGGTGTGATTCTGAGGGATTCGCATGGTATCGCTCAGGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgta-gcgatttccgactttctctttagac-cttctgtatgccgcactggaa-agtcttggggcttaaacagtgagctgtcaggggctatgcatggtaaacgct
||||| |||||||||||||| ||||| || ||||| || ||||| ||||||||||||||||| ||||| |||||  |||| || || |||||||  ||||||  | | ||||   ||     ||  |   |   | | ||      | |   |   || | ||||   |  ||   | || |   | ||     || |     
ACCCCGTCTCAGATTGGTGTCATTCTCAGAGATTCTCACGGTATTGCTCAGGTCAATAGCGTCACTGGCAGCAAAATCCTTCGCATCCTCAAAGCTCACGgtttgtgctttctctctgcaatttcggttacaattttctgttattttaggtcacggtttgtgctttctctctgcaatttcggttacaattttctgttatt---

upper sequence: PP1S97_272V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA05G03850.1 (Glycine max), 5'ss of exon 3
ACCCCTTCTCAGATTGGTGTGATTCTGAGGGATTCGCATGGTATCGCTCAGGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgta-gcgatttccgactttctctttagac-cttctgtatgccgcactggaaagtcttggggcttaaacagtgagctgtcaggggctatgcatggtaaacgct
||||| |||||||||||||| ||||| || ||||| || ||||| ||||||||||||||||| ||||| |||||  |||| || || |||||||  ||||||  | | ||||   ||     ||  |   |   | | ||      | |  | |  ||     || |  || |   |  |  || ||    |   | | |  
ACCCCGTCTCAGATTGGTGTCATTCTCAGAGATTCTCACGGTATTGCTCAGGTCAATAGCGTCACTGGCAGCAAAATCCTTCGCATCCTCAAAGCTCACGgtttgtgctttctctctgcaatttcggttacaattttctgttattttaggtaataatgataagtataatgttaatggatattggatagttgtaaaatatg--

upper sequence: PP1S97_272V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: GLYMA17G14370.1 (Glycine max), 5'ss of exon 3
ACCCCTTCTCAGATTGGTGTGATTCTGAGGGATTCGCATGGTATCGCTCAGGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgatttccgactttctctttagaccttctgtatgccgcactggaaagtcttggggct-taaacagtgagctgt-caggggctatgcatggtaaacgct-
||||| |||||||||||||| |||||  | ||||| || ||||| ||||||||||| ||||| ||||| |||||  |||| || || |||||||  ||||||      || |    | |  |||    ||  | | |   | | |   |||| |   |    |  | | ||   ||   ||  |  |   |||  | | | | 
ACCCCGTCTCAGATTGGTGTCATTCTTCGAGATTCTCACGGTATTGCTCAGGTCAACAGCGTCACTGGCAGCAAAATCCTTCGCATCCTCAAAGCTCACGgtttgtgctttctctctgcaattt---tctgttattttaggtaataataagtataatgttaatggatattggattggatagttgtaaaatatgtaataagtta

upper sequence: PP1S97_272V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv15s0048g00670.t01 (Vitis vinifera), 5'ss of exon 3
ACCCCTTCTCAGATTGGTGTGATTCTGAGGGATTCGCATGGTATCGCTCAGGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgta-gcgatttccgactttctctttagaccttctg-tatgccgcactggaaagtcttggggcttaaacagt-gagctgtcaggggctatgcatggtaaacgct
|| |||||||| |||||||| || ||  | ||||| |||||||| ||||||||||| || || |||||||||||| || | || |||||||| |  || |||  |        | |||||| ||    |    || | |     |    ||| ||  | ||  |    | | ||  |||   |   ||    |||| |     
ACACCTTCTCAAATTGGTGTTATACTTCGTGATTCCCATGGTATTGCTCAGGTCAAGAGTGTCACTGGGAGCAAGATCTTGCGGATTCTCAAGGCTCATGgtttgtttcccttggctttctattggtgcagattgctcttttctatcctaaattcaagagggatgtttatttgatttgtt--gttttaaaattggttag----

upper sequence: PP1S97_272V6.1 (Physcomitrella patens), 5'ss of exon 2
lower sequence: Vv16s0022g01590.t01 (Vitis vinifera), 5'ss of exon 3
ACCCCTTCTCAGATTGGTGTGATTCTGAGGGATTCGCATGGTATCGCTCAGGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgatttccgactttctctttagaccttctgtatgccgcactggaaagtcttggg-gctta---aacagtgagctgtcaggggct-atgcatggtaaacgct
|| || || ||||||||||| |||||  | ||||| || || || ||||||||||| ||||||||||| |||||| || | ||  ||||||| || || ||||  |  |     | || |  | |    || |||    | | ||||    || |||| || ||    ||   |||   | |  || | ||||||  ||      
ACACCATCGCAGATTGGTGTTATTCTTCGTGATTCTCACGGCATTGCTCAGGTCAAAAGCGTTACTGGAAGCAAGATCTTGCGCGTTCTCAAGGGTCATGgtaaagcata--agccttttagtgaatttttttgt---tctctctggtttctcatgggagcataggagactaggagaaattaaaggtttatgcattatagttttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162217792|gb|FC394092.1|FC394092
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|67574110|gb|BJ946934.1|BJ946934
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|15320083|gb|BI487628.1|BI487628
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|7207399|gb|AW561401.1|AW561401
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162201852|gb|FC377786.1|FC377786
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162235773|gb|FC411076.1|FC411076
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|67696887|gb|BJ957120.1|BJ957120
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162235772|gb|FC411075.1|FC411075
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|67699351|gb|BJ959584.1|BJ959584
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162246240|gb|FC423624.1|FC423624
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|15729347|gb|BI741270.1|BI741270
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|19786584|gb|BQ040505.1|BQ040505
EST:     ATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: ATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|6102234|gb|AW126704.1|AW126704
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCNTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|18374703|gb|BJ206281.1|BJ206281
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|15261956|gb|BI437266.1|BI437266
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162259200|gb|FC435220.1|FC435220
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162226145|gb|FC401605.1|FC401605
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|19790422|gb|BQ041862.1|BQ041862
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTTCTTTTATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162202712|gb|FC379018.1|FC379018
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|67574049|gb|BJ946873.1|BJ946873
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAANGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162274364|gb|FC450391.1|FC450391
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162216850|gb|FC393032.1|FC393032
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162202711|gb|FC379017.1|FC379017
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162223014|gb|FC399944.1|FC399944
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162223015|gb|FC399945.1|FC399945
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162277626|gb|FC453257.1|FC453257
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|15327406|gb|BI488045.1|BI488045
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162244862|gb|FC425479.1|FC425479
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCTG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|7147815|gb|AW509737.1|AW509737
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162257772|gb|FC434219.1|FC434219
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162228862|gb|FC405006.1|FC405006
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162244863|gb|FC425480.1|FC425480
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCTG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162260562|gb|FC436150.1|FC436150
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162201851|gb|FC377785.1|FC377785
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|7582801|gb|AW698965.1|AW698965
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162243080|gb|FC417928.1|FC417928
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162249693|gb|FC426521.1|FC426521
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|19790686|gb|BQ042002.1|BQ042002
EST:     ATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: ATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|37848826|gb|BJ606834.1|BJ606834
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|67697475|gb|BJ957708.1|BJ957708
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162224128|gb|FC399192.1|FC399192
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|208364375|gb|DC950676.1|DC950676
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|208391463|gb|DC937611.1|DC937611
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162243081|gb|FC417929.1|FC417929
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|7286392|gb|AW598933.1|AW598933
EST:     GCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162276009|gb|FC452285.1|FC452285
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|67572354|gb|BJ945178.1|BJ945178
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|15261796|gb|BI437106.1|BI437106
EST:     GTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162260563|gb|FC436151.1|FC436151
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|15261841|gb|BI437151.1|BI437151
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|67695729|gb|BJ955962.1|BJ955962
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|67575868|gb|BJ948692.1|BJ948692
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|67573503|gb|BJ946327.1|BJ946327
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162257771|gb|FC434218.1|FC434218
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|162246239|gb|FC423623.1|FC423623
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|19782649|gb|BQ039884.1|BQ039884
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|67697502|gb|BJ957735.1|BJ957735
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|67574084|gb|BJ946908.1|BJ946908
EST:     GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: GGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
EST: gi|15320374|gb|BI488200.1|BI488200
EST:     AGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACG                         GTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG
genomic: AGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 26

ACCCCTTCTCAGATTGGTGTGATTCTGAGGGATTCGCATGGTATCGCTCAGGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgattt ... tggcgttcagGTCTGGGTCCTGAGATCCCTGAAGACCTGTACCACTTGATCAAGAAGGCCGTTGCCGTGCGTAAGCATTTGGAGAGGAACCGCAAAGATAAGGATTCCAA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCCCTTCTCAGATTGGTGTGATTCTGAGGGATTCGCATGGTATCGCTCAGGTCAATAGCGTTACTGGGAGCAAGGTCCTCCGTATTCTCAAAGGACACGgtagcgatttccgactttctctttagaccttctgtatgccgcactggaaagtcttggggcttaaacagtgagctgtcaggggctatgcatggtaaacgct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG