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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCCCAACTGTATTTGACGTAGTCACGGGGAAAAAGCCTGTGAAGGAAAAGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGgtgagtactgtggaactactgtctatctatctcataatgactagaaccgttttctgaagatgtagttaggagtctaactttattccgtaggaagggtcac...

Basic information

species Physcomitrella patens
transcript PP1S97_167V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208373173|gb|DC945141.1|DC945141
EST:     AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTG                         CAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG
genomic: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGgtgagtactg ... tgtttttcagCAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG
EST: gi|18335857|gb|BJ167878.1|BJ167878
EST:     AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTG                         CAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG
genomic: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGgtgagtactg ... tgtttttcagCAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG
EST: gi|18338539|gb|BJ170563.1|BJ170563
EST:     AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTG                         CAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG
genomic: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGgtgagtactg ... tgtttttcagCAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG
EST: gi|67723789|gb|BJ974048.1|BJ974048
EST:     AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTG                         CAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG
genomic: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGgtgagtactg ... tgtttttcagCAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG