1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataaatgaagtaacgtttgaatgccacgttgccttctctcgcatgtgtttttgaatatatgcagtcaggagttaactgtgcctggtgttctgtttttcagCAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAGGACGAGGAGGAACCTCTTGATGACGAGGATGACGAGGAACATGGTGACA
species | Physcomitrella patens |
transcript | PP1S97_167V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTG CAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAGEST: gi|18335857|gb|BJ167878.1|BJ167878
genomic: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGgtgagtactg ... tgtttttcagCAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG
EST: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTG CAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAGEST: gi|18338539|gb|BJ170563.1|BJ170563
genomic: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGgtgagtactg ... tgtttttcagCAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG
EST: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTG CAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAGEST: gi|67723789|gb|BJ974048.1|BJ974048
genomic: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGgtgagtactg ... tgtttttcagCAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG
EST: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTG CAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG
genomic: AGCCCGCTGTCAATAGCTCTGGCACCAAAGCGAAATCTGCTACCAAAGTGgtgagtactg ... tgtttttcagCAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAG
tgtttttgaatatatgcagtcaggagttaactgtgcctggtgttctgtttttcagCAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAGGACGAGGAGGAACCTCTTGATGACGAGGATGACGAGGAACATGGTGACA
agttaac putative branch site (score: 3)
ttctgtttttc putative PPT
ttgaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaatgaagtaacgtttgaatgccacgttgccttctctcgcatgtgtttttgaatatatgcagtcaggagttaactgtgcctggtgttctgtttttcagCAGCAGGTGACTCAAGCAAAGCCGGCAAAACCTGCTCCACCACCTCCCAAGGACGAGGAGGAACCTCTTGATGACGAGGATGACGAGGAACATGGTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG