1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCAGCGTAAAGACTGGCTTTCTTTAGTTGCTGTGCACAGTGATGCCTGGCTACTTGCTGTTGCTTTCTATTACGGAGCTCGGTTTGATAAGAACGAGAGgtctgctatctgaacttgatataatgctgcttcttttttgtatttttgacgagttatgccacacccattcatgtattatttccaattgaaattactacat...
species | Physcomitrella patens |
transcript | PP1S97_167V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTACTTGCTGTTGCTTTNTATTACGGAGCTCGGTTTGATAAGAACGAGAG AAAGCGTCTTTTTACCATGATAAATGAGCTCCCAACTGTATTTGACGTAGTEST: gi|100354113|gb|BY945717.1|BY945717
genomic: CTACTTGCTGTTGCTTTCTATTACGGAGCTCGGTTTGATAAGAACGAGAGgtctgctatc ... atatttacagAAAGCGTCTTTTTACCATGATAAATGAGCTCCCAACTGTATTTGACGTAGT
EST: ACTTTGCTGT-GCTTTCTATTACGGAGCTNCGGTTTGATA-GAACGAGAG NAAGCGTCTTTTCACCATGATAAATGAGCTCCCAACTGTATTEST: gi|18335857|gb|BJ167878.1|BJ167878
genomic: ACTT-GCTGTTGCTTTCTATTACGGAGCT-CGGTTTGATAAGAACGAGAGgtctgctatc ... atatttacagAAAGCGTCTTTTTACCATGATAAATGAGCTCCCAACTGTATT
EST: CTACTTGCTGTTGCTTTCTATTACGNAGCTCGGTTTGATAAGAACGAGAG AAAGCGTCTTTTTACCATGATAAATGAGCTCCCAACTGTATTTGACGTAGTEST: gi|18338539|gb|BJ170563.1|BJ170563
genomic: CTACTTGCTGTTGCTTTCTATTACGGAGCTCGGTTTGATAAGAACGAGAGgtctgctatc ... atatttacagAAAGCGTCTTTTTACCATGATAAATGAGCTCCCAACTGTATTTGACGTAGT
EST: ACTTGCTGTTGCTTTCTATTACGNAGCTCGGTTTGATAAGAACGAGAG AAAGCGTCTTTTTACCATGATAAATGAGCTCCCAACTGTATTTGACGTAGTEST: gi|67723789|gb|BJ974048.1|BJ974048
genomic: ACTTGCTGTTGCTTTCTATTACGGAGCTCGGTTTGATAAGAACGAGAGgtctgctatc ... atatttacagAAAGCGTCTTTTTACCATGATAAATGAGCTCCCAACTGTATTTGACGTAGT
EST: CTACTTGCTGTTGCTTTCTATTACGGAGCTCGGTTTGATAAGAACGAGAG AAAGCGTCTTTTTACCATGATAAATGAGCTCCCAACTGTATTTGACGTAGT
genomic: CTACTTGCTGTTGCTTTCTATTACGGAGCTCGGTTTGATAAGAACGAGAGgtctgctatc ... atatttacagAAAGCGTCTTTTTACCATGATAAATGAGCTCCCAACTGTATTTGACGTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAGCGTAAAGACTGGCTTTCTTTAGTTGCTGTGCACAGTGATGCCTGGCTACTTGCTGTTGCTTTCTATTACGGAGCTCGGTTTGATAAGAACGAGAGgtctgctatctgaacttgatataatgctgcttcttttttgtatttttgacgagttatgccacacccattcatgtattatttccaattgaaattactacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC