1 5' 3' | 2 5' 3' | 3 5' 3' |
CGCAATCGGAAGGTGGTTGTGAAGAAATTCAAAGGAAAGGTATTTGTGGACATTAGAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAGgttagtaaacgtacggcttcgcattgaaattcaattgcacttcatgaggataatatagtatccgattcaccaacacatttcacgcctttttttaaactgatgaatcgttttgtatgccag
species | Physcomitrella patens |
transcript | PP1S97_13V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATTANAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAG GTATTTCGCTCCCCCTGGATCAGEST: gi|67571744|gb|BJ944568.1|BJ944568
genomic: CATTAGAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAGgttagtaaac ... tgtatgccagGTATTTCGCTCCCCCTGGATCAG
EST: CATTAGAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAG GTATTTCGCTCCCCCTGGATCAGGTACAGTTCATCTTGTTGTAACTCTTTTEST: gi|67695116|gb|BJ955349.1|BJ955349
genomic: CATTAGAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAGgttagtaaac ... tgtatgccagGTATTTCGCTCCCCCTGGATCAGGTACAGTTCATCTTGTTGTAACTCTTTT
EST: CATTAGAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAG GTATTTCGCTCCCCCTGGATCAGGTACAGTTCATCTTGTTGTAACTCTTTT
genomic: CATTAGAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAGgttagtaaac ... tgtatgccagGTATTTCGCTCCCCCTGGATCAGGTACAGTTCATCTTGTTGTAACTCTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCAATCGGAAGGTGGTTGTGAAGAAATTCAAAGGAAAGGTATTTGTGGACATTAGAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAGgttagtaaacgtacggcttcgcattgaaattcaattgcacttcatgaggataatatagtatccgattcaccaacacatttcacgcctttttttaaactgatgaatcgttttgtatgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA