1 5' 3' | 2 5' 3' | 3 5' 3' |
GGTTTGCAGTAATCCGTTTCATTTTAACTTGGAGAATCCTTGAGCCTGAGACGTTGTCGCCGCTGGAGAGTTGGTGTGCTACATAGTAGGCTGCGATTGGgtgagttgagggactgttttctttccttcgtacttggcagcttgctgctcagttgaaatggtgaggtgagggctgagttctaattttattatactgtgct...
species | Physcomitrella patens |
transcript | PP1S97_13V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGTTGTCGCCGCTGGAGAGTTGGTGTGCTACATAGTAGGCTGCGATTGG TGTGAGCCTGCACATTTTGTTGCATCGAAAAAGAACTTGAAAAGAAACGTTEST: gi|67571744|gb|BJ944568.1|BJ944568
genomic: ACGTTGTCGCCGCTGGAGAGTTGGTGTGCTACATAGTAGGCTGCGATTGGgtgagttgag ... gagactacagTGTGAGCCTGCACATTTTGTTGCATCGAAAAAGAACTTGAAAAGAAACGTT
EST: ACGTTGTCGCCGCTGGAGAGTTGGTGTGCTACATAGTAGGCTGCGATTGG TGTGAGCCTGCACATTTTGTTGCATCGAAAAAGAACTTGAAAAGAAACGTTEST: gi|67695116|gb|BJ955349.1|BJ955349
genomic: ACGTTGTCGCCGCTGGAGAGTTGGTGTGCTACATAGTAGGCTGCGATTGGgtgagttgag ... gagactacagTGTGAGCCTGCACATTTTGTTGCATCGAAAAAGAACTTGAAAAGAAACGTT
EST: ACGTTGTCGCCGCTGGAGAGTTGGTGTGCTACATAGTAGGCTGCGATTGG TGTGAGCCTGCACATTTTGTTGCATCGAAAAAGAACTTGAAAAGAAACGTTEST: gi|7147645|gb|AW509567.1|AW509567
genomic: ACGTTGTCGCCGCTGGAGAGTTGGTGTGCTACATAGTAGGCTGCGATTGGgtgagttgag ... gagactacagTGTGAGCCTGCACATTTTGTTGCATCGAAAAAGAACTTGAAAAGAAACGTT
EST: ACGTTGTCGCCGCTGGAGAGTTGGTGTGCTACATAGTAGGCTGCGATTGG TGTGAGCCTGCACATTTTGTTGCATCGAAAAAGAACTTGAAAAGAAACGTTEST: gi|18348494|gb|BJ180543.1|BJ180543
genomic: ACGTTGTCGCCGCTGGAGAGTTGGTGTGCTACATAGTAGGCTGCGATTGGgtgagttgag ... gagactacagTGTGAGCCTGCACATTTTGTTGCATCGAAAAAGAACTTGAAAAGAAACGTT
EST: ACGTTGTCGCCGCTGGAGAGTTGGTGTGCTACATAGTAGGCTGCGATTGG TGTGAGCCTGCACATTTTGTTGCATCGAAAAAGAACTTGAAAAGAAACGTT
genomic: ACGTTGTCGCCGCTGGAGAGTTGGTGTGCTACATAGTAGGCTGCGATTGGgtgagttgag ... gagactacagTGTGAGCCTGCACATTTTGTTGCATCGAAAAAGAACTTGAAAAGAAACGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTGCAGTAATCCGTTTCATTTTAACTTGGAGAATCCTTGAGCCTGAGACGTTGTCGCCGCTGGAGAGTTGGTGTGCTACATAGTAGGCTGCGATTGGgtgagttgagggactgttttctttccttcgtacttggcagcttgctgctcagttgaaatggtgaggtgagggctgagttctaattttattatactgtgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA