Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtaaacgtacggcttcgcattgaaattcaattgcacttcatgaggataatatagtatccgattcaccaacacatttcacgcctttttttaaactgatgaatcgttttgtatgccagGTATTTCGCTCCCCCTGGATCAGGTACAGTTCATCTTGTTGTAACTCTTTTATTTCTGACCGTCCTGTTGCCGCATATTGATGTATTTTCATCCTCAGGG

Basic information

species Physcomitrella patens
transcript PP1S97_13V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18343999|gb|BJ176038.1|BJ176038
EST:     CATTANAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAG                         GTATTTCGCTCCCCCTGGATCAG
genomic: CATTAGAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAGgttagtaaac ... tgtatgccagGTATTTCGCTCCCCCTGGATCAG
EST: gi|67571744|gb|BJ944568.1|BJ944568
EST:     CATTAGAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAG                         GTATTTCGCTCCCCCTGGATCAGGTACAGTTCATCTTGTTGTAACTCTTTT
genomic: CATTAGAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAGgttagtaaac ... tgtatgccagGTATTTCGCTCCCCCTGGATCAGGTACAGTTCATCTTGTTGTAACTCTTTT
EST: gi|67695116|gb|BJ955349.1|BJ955349
EST:     CATTAGAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAG                         GTATTTCGCTCCCCCTGGATCAGGTACAGTTCATCTTGTTGTAACTCTTTT
genomic: CATTAGAGAGTTCTTCAATAAAGAAGGCAACGAACTCCCAGGAAAGAAAGgttagtaaac ... tgtatgccagGTATTTCGCTCCCCCTGGATCAGGTACAGTTCATCTTGTTGTAACTCTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaccaacacatttcacgcctttttttaaactgatgaatcgttttgtatgccagGTATTTCGCTCCCCCTGGATCAGGTACAGTTCATCTTGTTGTAACTCTTTTATTTCTGACCGTCCTGTTGCCGCATATTGATGTATTTTCATCCTCAGGG
                             aactgat  putative branch site (score: 3)
                                       tcgtttt  putative PPT
                     tttttttaaactgat  TA-rich tract