1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgtacttgttcttgaagttatgggtatcatatttttgcttctttcaggttgttatagttattccttagcagagtttgcttcctcgtcccaacttgtccttgtgcttaataatacccaggcatgttaaatgctgttttttgttcctatcctcatgtggattgtcttaagtgaaagctctatggattgttcagAACCGGGTTGGACTTGATCAAGGGAGTAGTGAGAAACAATATAGAAGCAGGTGTGGTTGAGCCAGCCATGAGCAAAGTTAAAATAATTCAG
species | Physcomitrella patens |
transcript | PP1S97_11V6.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCGTACCATCACAGTGCTCAAACGAAGGCAGATAAACAACATCTTTCTGG AACCGGGTTGGACTTGATCAAGGGAGTAGTGAGAAACAATATAGAAGCAGGEST: gi|162260124|gb|FC435843.1|FC435843
genomic: GCGTACCATCACAGTGCTCAAACGAAGGCAGATAAACAACATCTTTCTGGgtatgtactt ... gattgttcagAACCGGGTTGGACTTGATCAAGGGAGTAGTGAGAAACAATATAGAAGCAGG
EST: GCGTACCATCACAGTGCTCAAACGAAGGCAGATAAACAACATCTTTCTGG AACCGGGTTGGACTTGATCAAGGGAGTAGTGAGAAACAATATAGAAGCAGGEST: gi|37823381|gb|BJ581447.1|BJ581447
genomic: GCGTACCATCACAGTGCTCAAACGAAGGCAGATAAACAACATCTTTCTGGgtatgtactt ... gattgttcagAACCGGGTTGGACTTGATCAAGGGAGTAGTGAGAAACAATATAGAAGCAGG
EST: GCGTACCATCACAGTGCTCAAACGAAGGCAGATAAACAACATCTTTCTGG AACCGGGTTGGACTTGATCAAGGGAGTAGTGAGAAACAATATAGAAGCAGGEST: gi|208392115|gb|DC957236.1|DC957236
genomic: GCGTACCATCACAGTGCTCAAACGAAGGCAGATAAACAACATCTTTCTGGgtatgtactt ... gattgttcagAACCGGGTTGGACTTGATCAAGGGAGTAGTGAGAAACAATATAGAAGCAGG
EST: GCGTACCATCACAGTGCTCAAACGAAGGCAGATAAACAACATCTTTCTGG AACCGGGTTGGACTTGATCAAGGGAGTAGTGAGAAACAATATAGAAGCAGG
genomic: GCGTACCATCACAGTGCTCAAACGAAGGCAGATAAACAACATCTTTCTGGgtatgtactt ... gattgttcagAACCGGGTTGGACTTGATCAAGGGAGTAGTGAGAAACAATATAGAAGCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtacttgttcttgaagttatgggtatcatatttttgcttctttcaggttgttatagttattccttagcagagtttgcttcctcgtcccaacttgtccttgtgcttaataatacccaggcatgttaaatgctgttttttgttcctatcctcatgtggattgtcttaagtgaaagctctatggattgttcagAACCGGGTTGGACTTGATCAAGGGAGTAGTGAGAAACAATATAGAAGCAGGTGTGGTTGAGCCAGCCATGAGCAAAGTTAAAATAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG