1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGCCCAGGCCTATGCCAAAAGTAATGGCATGTTCTTTATTGAAACGTCAGCGAAGACTTCTGAGAACGTGAACCAATTATTTGAGgtagatatctatcaattttgtgaagttggccattgtcttcatcctcccttcaacctttagtccgtcagttatgtctctgatttgtactcagcttgagttc...
species | Physcomitrella patens |
transcript | PP1S97_119V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTATTGAAACGTCAGCGAAGACTTCTGAGAACGTGAACCAATTATTTGAG CAATGCACTGAAGGCGATATTGCCAGGAAGCCCAAGCATCCAAGTCTGTACEST: gi|37836924|gb|BJ594932.1|BJ594932
genomic: TTATTGAAACGTCAGCGAAGACTTCTGAGAACGTGAACCAATTATTTGAGgtagatatct ... tgcctggcagCAATGCACTGAAGGCGATATTGCCAGGAAGCCCAAGCATCCAAGTCTGTAC
EST: TTATTGAAACGTCAGCGAAGACTTCTGAGAACGTGAACCAATTATTTGAG CAATGCACTGAAGGCGATATTGCCAGGAAGCCCAAGCATCCAAGTCTGTACEST: gi|37823781|gb|BJ581847.1|BJ581847
genomic: TTATTGAAACGTCAGCGAAGACTTCTGAGAACGTGAACCAATTATTTGAGgtagatatct ... tgcctggcagCAATGCACTGAAGGCGATATTGCCAGGAAGCCCAAGCATCCAAGTCTGTAC
EST: TTATTGAAACGTCAGCGAAGACTTCTGAGAACGTGAACCAATTATTTGAG CAATGCACTGAAGGCGATATTGCCAGGAAGCCCAAGCATCCAAGTCTGTACEST: gi|37830231|gb|BJ588243.1|BJ588243
genomic: TTATTGAAACGTCAGCGAAGACTTCTGAGAACGTGAACCAATTATTTGAGgtagatatct ... tgcctggcagCAATGCACTGAAGGCGATATTGCCAGGAAGCCCAAGCATCCAAGTCTGTAC
EST: TTATTGAAACGTCAGCGAAGACTTCTGAGAACGTGAACCAATTATTTGAG CAATGCACTGAAGGCGATATTGCCAGGAAGCCCAAGCATCCAAGTCTGTACEST: gi|37834132|gb|BJ592144.1|BJ592144
genomic: TTATTGAAACGTCAGCGAAGACTTCTGAGAACGTGAACCAATTATTTGAGgtagatatct ... tgcctggcagCAATGCACTGAAGGCGATATTGCCAGGAAGCCCAAGCATCCAAGTCTGTAC
EST: TTATTGAAACGTCAGCGAAGACTTCTGAGAACGTGAACCAATTATTTGAG CAATGCACTGAAGGCGATATTGCCAGGAAGCCCAAGCATCCAAGTCTGTAC
genomic: TTATTGAAACGTCAGCGAAGACTTCTGAGAACGTGAACCAATTATTTGAGgtagatatct ... tgcctggcagCAATGCACTGAAGGCGATATTGCCAGGAAGCCCAAGCATCCAAGTCTGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCCCAGGCCTATGCCAAAAGTAATGGCATGTTCTTTATTGAAACGTCAGCGAAGACTTCTGAGAACGTGAACCAATTATTTGAGgtagatatctatcaattttgtgaagttggccattgtcttcatcctcccttcaacctttagtccgtcagttatgtctctgatttgtactcagcttgagttc
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