1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGACGGTTGGTGCATCTTTTCTCTCCCAGACGATTAGCTTACAAGACTCAACCAACGTTAAATTCGAGATATGGGACACTGCTGGTCAAGAACGgtgagttacagttccgatttgtcacttcatcccaaatacttatcaccccttttattatttttagtcttttaataaagaagttaagtttatttcattagat...
species | Physcomitrella patens |
transcript | PP1S97_119V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACTCAACCAACGTTAAATTCGAGATATGGGACACTGCTGGTCAAGAACG ATATGCTTCGTTAGCGCCCTTATATTACAGGGGTGCAGCAGCGGCAGTCGTEST: gi|37836924|gb|BJ594932.1|BJ594932
genomic: GACTCAACCAACGTTAAATTCGAGATATGGGACACTGCTGGTCAAGAACGgtgagttaca ... tgtgaaatagATATGCTTCGTTAGCGCCCTTATATTACAGGGGTGCAGCAGCGGCAGTCGT
EST: GAGATATGGGACACTGCTGGTCAAGAACG ATATGCTTCGTTAGCGCCCTTATATTACAGGGGTGCAGCAGCGGCAGTCGTEST: gi|37823781|gb|BJ581847.1|BJ581847
genomic: GAGATATGGGACACTGCTGGTCAAGAACGgtgagttaca ... tgtgaaatagATATGCTTCGTTAGCGCCCTTATATTACAGGGGTGCAGCAGCGGCAGTCGT
EST: TCGAGATATGGGACACTGCTGGTCAAGAACG ATATGCTTCGTTAGCGCCCTTATATTACAGGGGTGCAGCAGCGGCAGTCGTEST: gi|37834132|gb|BJ592144.1|BJ592144
genomic: TCGAGATATGGGACACTGCTGGTCAAGAACGgtgagttaca ... tgtgaaatagATATGCTTCGTTAGCGCCCTTATATTACAGGGGTGCAGCAGCGGCAGTCGT
EST: GACTCAACCAACGTTAAATTCGAGATATGGGACACTGCTGGTCAAGAACG ATATGCTTCGTTAGCGCCCTTATATTACAGGGGTGCAGCAGCGGCAGTCGT
genomic: GACTCAACCAACGTTAAATTCGAGATATGGGACACTGCTGGTCAAGAACGgtgagttaca ... tgtgaaatagATATGCTTCGTTAGCGCCCTTATATTACAGGGGTGCAGCAGCGGCAGTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACGGTTGGTGCATCTTTTCTCTCCCAGACGATTAGCTTACAAGACTCAACCAACGTTAAATTCGAGATATGGGACACTGCTGGTCAAGAACGgtgagttacagttccgatttgtcacttcatcccaaatacttatcaccccttttattatttttagtcttttaataaagaagttaagtttatttcattagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC