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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacattcacttgtcgtatcaccagttctcattagttgtagttgttttcaccatgtattttatagaatcccatggagagtaagtgttccagcccattgatctctttcctcgatttgcagTTAGTTCTGTTGGGTGACTCAGGAGTCGGGAAGAGCTGCATTCTCTTGCGGTTCGTTCGTGGACAATTCGATCCGTCGTCTAAG

Basic information

species Physcomitrella patens
transcript PP1S97_119V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100409984|gb|BY974351.1|BY974351
EST:     TGCACACCTCTCAGGCTGAAGCTTTGGATTCCAAACAAATACGAATCAAG                         TTTAGT-CTGTTGGGTGACTCAGGAGTCGGGAAGAGCTGCATTCTCTTGCG
genomic: TGCACACCTCTCAGGCTGAAGCTTTGGATTCCAAACAAATACGAATCAAGgttacattca ... cgatttgcagTT-AGTTCTGTTGGGTGACTCAGGAGTCGGGAAGAGCTGCATTCTCTTGCG
EST: gi|208384842|gb|DC907455.1|DC907455
EST:     TGCACACCTCTCAGGCTGAAGCTTTGGATTCCAAACAAATACGAATCAAG                         TTAGTTCTGTTGGGTGACTCAGGA
genomic: TGCACACCTCTCAGGCTGAAGCTTTGGATTCCAAACAAATACGAATCAAGgttacattca ... cgatttgcagTTAGTTCTGTTGGGTGACTCAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatcccatggagagtaagtgttccagcccattgatctctttcctcgatttgcagTTAGTTCTGTTGGGTGACTCAGGAGTCGGGAAGAGCTGCATTCTCTTGCGGTTCGTTCGTGGACAATTCGATCCGTCGTCTAAG
                             cattgat  putative branch site (score: 4)
                                   tctctttcctcgattt  CT-rich tract