1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTCGTTAGCGCCCTTATATTACAGGGGTGCAGCAGCGGCAGTCGTAGTGTATGATATCACAAACCCGGAGACATTCCTGAAAGCTCAATTCTGGGTCAAAgtatgttgcattcatacccctaggagtcttttaaaactgggtattaagtttttgctgtagcgaaaagcacgaggagttactttatttcaatgttactggctttaccgaaatagagttgactatttgttattgttaacttggatcccttttcatcacaatactcatcgcctccttatctttggtaacag
species | Physcomitrella patens |
transcript | PP1S97_119V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGATATCACAAACCCGGAGACATTCCTGAAAGCTCAATTCTGGGTCAAA GAGCTGCAGAAGCATGGGAATCCTGATATTGTAATGGCTCTGGTCGGGAATEST: gi|208370967|gb|DC944342.1|DC944342
genomic: ATGATATCACAAACCCGGAGACATTCCTGAAAGCTCAATTCTGGGTCAAAgtatgttgca ... ttggtaacagGAGCTGCAGAAGCATGGGAATCCTGATATTGTAATGGCTCTGGTCGGGAAT
EST: ATGATATCACAAACCCGGAGACATTCCTGAAAGCTCAATTCTGGGTCAAA GAGCTGCAGAAGCATGGGAATCCTGATATTGTAATGGCTCTGGTCGGGAATEST: gi|208351094|gb|DC921340.1|DC921340
genomic: ATGATATCACAAACCCGGAGACATTCCTGAAAGCTCAATTCTGGGTCAAAgtatgttgca ... ttggtaacagGAGCTGCAGAAGCATGGGAATCCTGATATTGTAATGGCTCTGGTCGGGAAT
EST: ATGATATCACAAACCCGGAGACATTCCTGAAAGCTCAATTCTGGGTCAAA GAGCTGCAGAAGCATGGGAATCCTGATATTGTAATGGCTCTGGTCGGGAAT
genomic: ATGATATCACAAACCCGGAGACATTCCTGAAAGCTCAATTCTGGGTCAAAgtatgttgca ... ttggtaacagGAGCTGCAGAAGCATGGGAATCCTGATATTGTAATGGCTCTGGTCGGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGTTAGCGCCCTTATATTACAGGGGTGCAGCAGCGGCAGTCGTAGTGTATGATATCACAAACCCGGAGACATTCCTGAAAGCTCAATTCTGGGTCAAAgtatgttgcattcatacccctaggagtcttttaaaactgggtattaagtttttgctgtagcgaaaagcacgaggagttactttatttcaatgttactggctttaccgaaatagagttgactatttgttattgttaacttggatcccttttcatcacaatactcatcgcctccttatctttggtaacag
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