1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttcgttttggttccgaactggacggtcagttccgattgaattgatctacatcaacgagtcattgaaaacaactagattatgtctagccggctgtatataaaacttgctcattcagctgcatcggcgccgtgtgcagGTGACGGTTGGTGCATCTTTTCTCTCCCAGACGATTAGCTTACAAGACTCAACCAACGTTAAATTCGAGATATGGGACACTGCTGGTCAAGAACG
species | Physcomitrella patens |
transcript | PP1S97_119V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGCATTCTCTTGCGGTTCGTTCGTGGACAATTCGATCCGTCGTCTAAG GTGACGGTTGGTGCATCTTTTCTCTCCCAGACGATTAGCTTACAAGACTCAEST: gi|208370967|gb|DC944342.1|DC944342
genomic: GCTGCATTCTCTTGCGGTTCGTTCGTGGACAATTCGATCCGTCGTCTAAGgttcgttttg ... ccgtgtgcagGTGACGGTTGGTGCATCTTTTCTCTCCCAGACGATTAGCTTACAAGACTCA
EST: GCTGCATTCTCTTGCGGTTCGTTCGTGGACAATTCGATCCGTCGTCTAAG GTGACGGTTGGTGCATCTTTTCTCTCCCAGACGATTAGCTTACAAGACTCAEST: gi|208351094|gb|DC921340.1|DC921340
genomic: GCTGCATTCTCTTGCGGTTCGTTCGTGGACAATTCGATCCGTCGTCTAAGgttcgttttg ... ccgtgtgcagGTGACGGTTGGTGCATCTTTTCTCTCCCAGACGATTAGCTTACAAGACTCA
EST: GCTGCATTCTCTTGCGGTTCGTTCGTGGACAATTCGATCCGTCGTCTAAG GTGACGGTTGGTGCATCTTTTCTCTCCCAGACGATTAGCTTACAAGACTCA
genomic: GCTGCATTCTCTTGCGGTTCGTTCGTGGACAATTCGATCCGTCGTCTAAGgttcgttttg ... ccgtgtgcagGTGACGGTTGGTGCATCTTTTCTCTCCCAGACGATTAGCTTACAAGACTCA
tctagccggctgtatataaaacttgctcattcagctgcatcggcgccgtgtgcagGTGACGGTTGGTGCATCTTTTCTCTCCCAGACGATTAGCTTACAAGACTCAACCAACGTTAAATTCGAGATATGGGACACTGCTGGTCAAGAACG
tgtatataaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttttggttccgaactggacggtcagttccgattgaattgatctacatcaacgagtcattgaaaacaactagattatgtctagccggctgtatataaaacttgctcattcagctgcatcggcgccgtgtgcagGTGACGGTTGGTGCATCTTTTCTCTCCCAGACGATTAGCTTACAAGACTCAACCAACGTTAAATTCGAGATATGGGACACTGCTGGTCAAGAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC