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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGTTGTTCCCACTTGTTTCAGACCCCTCTGGGAGACCAGGTTTTATTAGTTTTGTTGCATTAGCCATTTGCCATGGGCTGTACATCTTCTTCGCCCGgtatgtccctttccctttctgttcagtgcatgcgagcgtcgatagatggcaaggtgcacttagaagtttttgggtgaagctttgtacagctgtgtgtggg...

Basic information

species Physcomitrella patens
transcript PP1S97_119V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100409984|gb|BY974351.1|BY974351
EST:     AGTTTTGTTGCATTAGCCATTTGCCATGGGCTGTACATCTTCTTCGCCCG                         CTGCTGTGAAAGGCTCTGGGCGCTTGCACACCTCTCAGGCTGAAGCTTTGG
genomic: AGTTTTGTTGCATTAGCCATTTGCCATGGGCTGTACATCTTCTTCGCCCGgtatgtccct ... ttcgtcatagCTGCTGTGAAAGGCTCTGGGCGCTTGCACACCTCTCAGGCTGAAGCTTTGG
EST: gi|208384842|gb|DC907455.1|DC907455
EST:     ANTTTTGTTGCATTANCCATTTGCCATGGGCTGTACATCTTCTTCGCCCA                         CTGCTGTGAAAGGCTCTGGGCGCTTGCACACCTCTCAGGCTGAAGCTTTGG
genomic: AGTTTTGTTGCATTAGCCATTTGCCATGGGCTGTACATCTTCTTCGCCCGgtatgtccct ... ttcgtcatagCTGCTGTGAAAGGCTCTGGGCGCTTGCACACCTCTCAGGCTGAAGCTTTGG
EST: gi|100413699|gb|BY974946.1|BY974946
EST:     AGTTTTGTTGCATTAGCCATTTGCCATGGGCTGTACATCTTCTTCGCCCG                         CTGCTGGTGAAAGG-TCTGGGCGCTTG
genomic: AGTTTTGTTGCATTAGCCATTTGCCATGGGCTGTACATCTTCTTCGCCCGgtatgtccct ... ttcgtcatagCTGCTG-TGAAAGGCTCTGGGCGCTTG