1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAGCGGCGACTACTCTACCCTGTCCCCAAAAATCAGAGGCTACGGTTGGATACACGAGACGCAGTCTACATGGATCAAAAAAATGTCCAAGAAATTACAGgtgagtgctccgagcagcgttccttgtttacgagggtcacaaatacaggaagagagcggtagttatcgcgtattgttagaactgcattgaactgacactcagatgcggctatggcag
species | Physcomitrella patens |
transcript | PP1S97_107V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TACACGAGACGCAGTCTACATGGATCNNNNNNNTGTCCAAGAAATTACAG CTGGCGTACCTGAATGATGCTCCGGCACAACCCCCAGCCCCGCGCCATCTTEST: gi|18338189|gb|BJ170213.1|BJ170213
genomic: TACACGAGACGCAGTCTACATGGATCAAAAAAATGTCCAAGAAATTACAGgtgagtgctc ... gctatggcagCTGGCGTACCTGAATGATGCTCCGGCACAA-CCCCAG-CCCGCGCCATC-T
EST: TACACGAGACGCAGTCTACATGGATCNNNNNNNTGTCCAAGAAATTACAG CTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTGEST: gi|162163751|gb|FC340324.1|FC340324
genomic: TACACGAGACGCAGTCTACATGGATCAAAAAAATGTCCAAGAAATTACAGgtgagtgctc ... gctatggcagCTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG
EST: TGTCCAAGAAATTACAG CTGGCGTACNTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTGEST: gi|208374458|gb|DC948434.1|DC948434
genomic: TGTCCAAGAAATTACAGgtgagtgctc ... gctatggcagCTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG
EST: TACACGAGACGCAGTCTACATGGATCNNNNNNNTGTCCAAGAAATTACAG CTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTGEST: gi|208397477|gb|DC916375.1|DC916375
genomic: TACACGAGACGCAGTCTACATGGATCAAAAAAATGTCCAAGAAATTACAGgtgagtgctc ... gctatggcagCTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG
EST: TACACGAGACGCAGTCTACATGGATCNNNNNNNTGTCCAAGAAATTACAG CTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG
genomic: TACACGAGACGCAGTCTACATGGATCAAAAAAATGTCCAAGAAATTACAGgtgagtgctc ... gctatggcagCTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCGGCGACTACTCTACCCTGTCCCCAAAAATCAGAGGCTACGGTTGGATACACGAGACGCAGTCTACATGGATCAAAAAAATGTCCAAGAAATTACAGgtgagtgctccgagcagcgttccttgtttacgagggtcacaaatacaggaagagagcggtagttatcgcgtattgttagaactgcattgaactgacactcagatgcggctatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA