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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgctccgagcagcgttccttgtttacgagggtcacaaatacaggaagagagcggtagttatcgcgtattgttagaactgcattgaactgacactcagatgcggctatggcagCTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTGGCATACTTCCACATTCCGTTGCCAGAGTATAGCAATTTGGCTCCAGGTC

Basic information

species Physcomitrella patens
transcript PP1S97_107V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37849724|gb|BJ607732.1|BJ607732
EST:     TACACGAGACGCAGTCTACATGGATCNNNNNNNTGTCCAAGAAATTACAG                         CTGGCGTACCTGAATGATGCTCCGGCACAACCCCCAGCCCCGCGCCATCTT
genomic: TACACGAGACGCAGTCTACATGGATCAAAAAAATGTCCAAGAAATTACAGgtgagtgctc ... gctatggcagCTGGCGTACCTGAATGATGCTCCGGCACAA-CCCCAG-CCCGCGCCATC-T
EST: gi|18338189|gb|BJ170213.1|BJ170213
EST:     TACACGAGACGCAGTCTACATGGATCNNNNNNNTGTCCAAGAAATTACAG                         CTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG
genomic: TACACGAGACGCAGTCTACATGGATCAAAAAAATGTCCAAGAAATTACAGgtgagtgctc ... gctatggcagCTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG
EST: gi|162163751|gb|FC340324.1|FC340324
EST:     TGTCCAAGAAATTACAG                         CTGGCGTACNTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG
genomic: TGTCCAAGAAATTACAGgtgagtgctc ... gctatggcagCTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG
EST: gi|208374458|gb|DC948434.1|DC948434
EST:     TACACGAGACGCAGTCTACATGGATCNNNNNNNTGTCCAAGAAATTACAG                         CTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG
genomic: TACACGAGACGCAGTCTACATGGATCAAAAAAATGTCCAAGAAATTACAGgtgagtgctc ... gctatggcagCTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG
EST: gi|208397477|gb|DC916375.1|DC916375
EST:     TACACGAGACGCAGTCTACATGGATCNNNNNNNTGTCCAAGAAATTACAG                         CTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG
genomic: TACACGAGACGCAGTCTACATGGATCAAAAAAATGTCCAAGAAATTACAGgtgagtgctc ... gctatggcagCTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcgcgtattgttagaactgcattgaactgacactcagatgcggctatggcagCTGGCGTACCTGAATGATGCTCCGGCACAACCCCAGCCCGCGCCATCTCTGGCATACTTCCACATTCCGTTGCCAGAGTATAGCAATTTGGCTCCAGGTC
                           aactgac  putative branch site (score: 2)
        tattgtta  TA-rich tract