1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGTTCTTGTGAGAGGTGCGCGAGTGACCTCGAGAATCCGTGAACGCGTGTCTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAGgtttgagaggaaaattcagatttagcccgttcttttgcacatgcatagaacttagatcgccttacatatttctgcttagaattttcgcggaggggaggggttttttcacgtataactcacaatacttgtgccctgggctgtgacgattctatgtttccacag
species | Physcomitrella patens |
transcript | PP1S97_107V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAG GTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTAEST: gi|162163765|gb|FC340325.1|FC340325
genomic: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAGgtttgagagg ... gtttccacagGTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTA
EST: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAG GTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTAEST: gi|208354656|gb|DC934300.1|DC934300
genomic: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAGgtttgagagg ... gtttccacagGTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTA
EST: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAG GTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTAEST: gi|100391679|gb|BY989498.1|BY989498
genomic: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAGgtttgagagg ... gtttccacagGTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTA
EST: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAG GTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTAEST: gi|18330367|gb|BJ162373.1|BJ162373
genomic: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAGgtttgagagg ... gtttccacagGTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTA
EST: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAG GTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTAEST: gi|100443963|gb|BY982191.1|BY982191
genomic: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAGgtttgagagg ... gtttccacagGTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTA
EST: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAG GTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTAEST: gi|18325600|gb|BJ157597.1|BJ157597
genomic: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAGgtttgagagg ... gtttccacagGTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTA
EST: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAG GTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTAEST: gi|18360032|gb|BJ192093.1|BJ192093
genomic: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAGgtttgagagg ... gtttccacagGTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTA
EST: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAG GTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTAEST: gi|18368619|gb|BJ200704.1|BJ200704
genomic: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAGgtttgagagg ... gtttccacagGTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTA
EST: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAG GTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTA
genomic: CTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAGgtttgagagg ... gtttccacagGTTGCTGATATGCATTACGCTGATGGCGCCACCACGAGTTGCCAGGACGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCTTGTGAGAGGTGCGCGAGTGACCTCGAGAATCCGTGAACGCGTGTCTGCCCCAGTCCTTCGTTTCGGCAAAGATGGAACATTCAAAATTGTTCAGgtttgagaggaaaattcagatttagcccgttcttttgcacatgcatagaacttagatcgccttacatatttctgcttagaattttcgcggaggggaggggttttttcacgtataactcacaatacttgtgccctgggctgtgacgattctatgtttccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA