1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCGGACCCTTGGGGTCAGCTCGTCCATCTTCCGCGCCCTCCGCTTTGAGTGATGAGGAACTTAAGAAACAGTGGGAAGTGACCATCAGTGATTACTATAGgtgagccattctaaggtggacccttggcttcggtctggtgttccgttcagggatacatggtgctttggaagttagaaccaacgttggcggtaattttagg...
species | Physcomitrella patens |
transcript | PP1S96_133V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GATGAGGAACTTAAGAAACAGTGNGAAGTGACCATCAGTGATTACTATAG CGTGACAGACCTTAAGGAAAGCG-CATCGTGTGTCGAGGAGCTGAA-GCTTEST: gi|7207348|gb|AW561351.1|AW561351
genomic: GATGAGGAACTTAAGAAACAGTGGGAAGTGACCATCAGTGATTACTATAGgtgagccatt ... tggggtgcagCGTGACAGACCTTAAGGAA-GCGGCATCGTGTGTCGAGGAGCTGAAAGCTT
EST: GATGAGGAACTTAAGAAACAGTGGGAAGTGACCATCAGTGATTACTATAG CGTGACAGACCTTAAGGAAGCGGCATCGTGTGTCGAGGAGCTGAAAGCTTT
genomic: GATGAGGAACTTAAGAAACAGTGGGAAGTGACCATCAGTGATTACTATAGgtgagccatt ... tggggtgcagCGTGACAGACCTTAAGGAAGCGGCATCGTGTGTCGAGGAGCTGAAAGCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGACCCTTGGGGTCAGCTCGTCCATCTTCCGCGCCCTCCGCTTTGAGTGATGAGGAACTTAAGAAACAGTGGGAAGTGACCATCAGTGATTACTATAGgtgagccattctaaggtggacccttggcttcggtctggtgttccgttcagggatacatggtgctttggaagttagaaccaacgttggcggtaattttagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA