1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctgccagtatttcaaaacatgtaagcgtttattgttcctcttttggccagttttatcgtatagagagcagatttgtatgactcgatgttttctgaacagGACCACCTATGGGAGGAATGCGAAGGGCTCCATCTCCACAAGGGGGGATGCGCGGCGGGGGTGGGTTCGTTCAGGATGTAAGAATGGAGGATAGATCCCT
species | Physcomitrella patens |
transcript | PP1S96_133V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATGCGAGGTCCTCCGTCGCCAATGTATTCTCCTGGTCCAATGAGTGCCG GACCACCTATGGGAGGAATGCGAAGGGCTCCATCTCCACAAGGGGGGATGCEST: gi|162197175|gb|FC372501.1|FC372501
genomic: CATGCGAGGTCCTCCGTCGCCAATGTATTCTCCTGGTCCAATGAGTGCCGgtaagcttca ... ttctgaacagGACCACCTATGGGAGGAATGCGAAGGGCTCCATCTCCACAAGGGGGGATGC
EST: CATGCGAGGTCCTCCGTCGCCAATGTATTCTCCTGGTCCAATGAGTGCCG GACCACCTATGGGAGGAATGCGAAGGGCTCCATCTCCACAAGGGGGGATGCEST: gi|100388523|gb|BY952125.1|BY952125
genomic: CATGCGAGGTCCTCCGTCGCCAATGTATTCTCCTGGTCCAATGAGTGCCGgtaagcttca ... ttctgaacagGACCACCTATGGGAGGAATGCGAAGGGCTCCATCTCCACAAGGGGGGATGC
EST: CATGCGAGGTCCTCCGTCGCCAATGTATTCTCCTGGTCCAATGAGTGCCG GACCACCTATGGGAGGAATGCGAAGGGCTCCATCTCCACAAGGGGGGATGC
genomic: CATGCGAGGTCCTCCGTCGCCAATGTATTCTCCTGGTCCAATGAGTGCCGgtaagcttca ... ttctgaacagGACCACCTATGGGAGGAATGCGAAGGGCTCCATCTCCACAAGGGGGGATGC
ggccagttttatcgtatagagagcagatttgtatgactcgatgttttctgaacagGACCACCTATGGGAGGAATGCGAAGGGCTCCATCTCCACAAGGGGGGATGCGCGGCGGGGGTGGGTTCGTTCAGGATGTAAGAATGGAGGATAGATCCCT
tgttttct CT-rich tract
atttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgccagtatttcaaaacatgtaagcgtttattgttcctcttttggccagttttatcgtatagagagcagatttgtatgactcgatgttttctgaacagGACCACCTATGGGAGGAATGCGAAGGGCTCCATCTCCACAAGGGGGGATGCGCGGCGGGGGTGGGTTCGTTCAGGATGTAAGAATGGAGGATAGATCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT