1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgtatcagagttcaggatcggtttcgatcgttccattgtacagaggtatcaggagttttacaaaatcttttaattagaggttgttcttctggggtgcagCGTGACAGACCTTAAGGAAGCGGCATCGTGTGTCGAGGAGCTGAAAGCTTTCAAGCGCCATCCTGAAATGGTGAATATCTGGGTGTCGGAGTCTTTAGAG
species | Physcomitrella patens |
transcript | PP1S96_133V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATGAGGAACTTAAGAAACAGTGNGAAGTGACCATCAGTGATTACTATAG CGTGACAGACCTTAAGGAAAGCG-CATCGTGTGTCGAGGAGCTGAA-GCTTEST: gi|7207348|gb|AW561351.1|AW561351
genomic: GATGAGGAACTTAAGAAACAGTGGGAAGTGACCATCAGTGATTACTATAGgtgagccatt ... tggggtgcagCGTGACAGACCTTAAGGAA-GCGGCATCGTGTGTCGAGGAGCTGAAAGCTT
EST: GATGAGGAACTTAAGAAACAGTGGGAAGTGACCATCAGTGATTACTATAG CGTGACAGACCTTAAGGAAGCGGCATCGTGTGTCGAGGAGCTGAAAGCTTT
genomic: GATGAGGAACTTAAGAAACAGTGGGAAGTGACCATCAGTGATTACTATAGgtgagccatt ... tggggtgcagCGTGACAGACCTTAAGGAAGCGGCATCGTGTGTCGAGGAGCTGAAAGCTTT
ggtatcaggagttttacaaaatcttttaattagaggttgttcttctggggtgcagCGTGACAGACCTTAAGGAAGCGGCATCGTGTGTCGAGGAGCTGAAAGCTTTCAAGCGCCATCCTGAAATGGTGAATATCTGGGTGTCGGAGTCTTTAGAG
ttttaat putative branch site (score: 8)
ttgttcttct putative PPT
agttttacaaaatctt TA-rich tract