1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATTATGTCCGTCAGGGATGGGGGTCGAGCTGTAATGATTGGTCTTGCTCCCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatctttctcagagtggattcgattctctttgatcttccatgcaattgactatcaataacttgaatttggagaagcttagtggtttgctttggaactacccttgttgacaccagacttgtaatacctcttgctttatgaaacatattttttttgacgcataccttctgttgatccaccag
species | Physcomitrella patens |
transcript | PP1S95_68V6.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCTGGGGTGCCACGGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|162186380|gb|FC362936.1|FC362936
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|162188953|gb|FC364343.1|FC364343
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|162159246|gb|FC335099.1|FC335099
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|100388844|gb|BY988720.1|BY988720
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGNGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|162205800|gb|FC381038.1|FC381038
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|162164956|gb|FC342147.1|FC342147
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|37827597|gb|BJ585609.1|BJ585609
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|22131496|gb|BQ826646.1|BQ826646
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|162269678|gb|FC444883.1|FC444883
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|162164957|gb|FC342148.1|FC342148
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|162267940|gb|FC444021.1|FC444021
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|162158770|gb|FC335098.1|FC335098
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|37834907|gb|BJ592919.1|BJ592919
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|162267939|gb|FC444020.1|FC444020
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAATEST: gi|162186381|gb|FC362937.1|FC362937
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTTTGGTTCGTATGGAGGTAGAGCCAGGCAGGATCTTCCAAAT
EST: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAG ATTCGTGTTTT
genomic: CCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatct ... gatccaccagATTCGTGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTATGTCCGTCAGGGATGGGGGTCGAGCTGTAATGATTGGTCTTGCTCCCTGGGGTGCCACCGCTGATATCGAGATCACTCGACTTGTTCGCAGACAGgtgataatctttctcagagtggattcgattctctttgatcttccatgcaattgactatcaataacttgaatttggagaagcttagtggtttgctttggaactacccttgttgacaccagacttgtaatacctcttgctttatgaaacatattttttttgacgcataccttctgttgatccaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA