1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGTGTTGATATAAGTGATGGAAAGCTGGAGATGGCTAAGCAAATGGGTGCAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctaccacccgttccctgaactcaataccctagcctcttgccttaagtggatattcacaagcacagcacgtggtgtaatatcaaattttgatgat...
species | Physcomitrella patens |
transcript | PP1S95_68V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGGATGTTCCAGAAAGAATCAGG GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAGEST: gi|162188953|gb|FC364343.1|FC364343
genomic: GAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAGEST: gi|162159246|gb|FC335099.1|FC335099
genomic: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAGEST: gi|100388844|gb|BY988720.1|BY988720
genomic: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAGEST: gi|37827597|gb|BJ585609.1|BJ585609
genomic: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: AAAGAGGATGTTCCAGAAAGAATCAGG GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAGEST: gi|162269678|gb|FC444883.1|FC444883
genomic: AAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: AAGAGGATGTTCCAGAAAGAATCAGG GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAGEST: gi|162164957|gb|FC342148.1|FC342148
genomic: AAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAGEST: gi|162267940|gb|FC444021.1|FC444021
genomic: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAGEST: gi|162158770|gb|FC335098.1|FC335098
genomic: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: TGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAGEST: gi|162186381|gb|FC362937.1|FC362937
genomic: TGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
EST: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGG GAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
genomic: CAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctac ... aaacttttagGAAATTACAGGTGGACGAGGAGTTGACATAGCTGTGGAGGCTTTGGGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGTTGATATAAGTGATGGAAAGCTGGAGATGGCTAAGCAAATGGGTGCAACACACACTATTAATGCCTCTAAAGAGGATGTTCCAGAAAGAATCAGGgtatgcctaccacccgttccctgaactcaataccctagcctcttgccttaagtggatattcacaagcacagcacgtggtgtaatatcaaattttgatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA