1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttagttgacagacattttggatcaccaagtggattgctcttgtgttgaaaatgctctgtgcagctaataatattcattcgtgtcaaactgttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTG
species | Physcomitrella patens |
transcript | PP1S95_68V6.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTTTGTGTGAAG GGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGAEST: gi|162267940|gb|FC444021.1|FC444021
genomic: CTTTTGTGTGAAGgtaacatcac ... ttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
EST: TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAG GGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGAEST: gi|162186381|gb|FC362937.1|FC362937
genomic: TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAGgtaacatcac ... ttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
EST: TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAG GGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
genomic: TTGTGGGTGCATTCATCATGCCCTGTGGTGGCTGTTTCTTTTGTGTGAAGgtaacatcac ... ttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGA
tgaaaatgctctgtgcagctaataatattcattcgtgtcaaactgttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTG
agctaat putative branch site (score: 15)
taataatattcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagttgacagacattttggatcaccaagtggattgctcttgtgttgaaaatgctctgtgcagctaataatattcattcgtgtcaaactgttgtgtacagGGTCAAGAGGATTTGTGTGAGAGTTTCTTAAAGTACAATCGAGGTTTAGGAGGTCTTTACGATGGCACAACACGATTATACATGTCTAGTAGTG
- - - - - - - - - - - - - - - - - - - - - tgttgaa